Glycerol 3-phosphate dehydrogenase for butanol production

Patent metadata

Field	Value
Publication number	US-9944954-B2
Application number	US-201615228770-A
Country	US
Kind code	B2
Filing date	Aug 4, 2016
Priority date	Mar 14, 2013
Publication date	Apr 17, 2018
Grant date	Apr 17, 2018

Abstract

Provided herein are glycerol-3-phosphate dehydrogenase (GPD) enzymes with increased K M for NADH and GPD enzymes with substantially the same affinity for NADH and NADPH and/or are feedback inhibited by glycerol-3-phosphate. Also provided herein are recombinant microorganisms comprising a heterologous gene encoding GPD and a deletion or disruption in an endogenous gene encoding GPD. Also provided are recombinant microorganisms comprising a heterologous gene encoding GPD and a butanol biosynthetic pathway. Further provided are methods of producing butanol comprising providing the recombinant microorganisms described herein and contacting the recombinant microorganism with at least one fermentable carbon substrate under conditions wherein butanol is produced.

First claim

What is claimed is:

1. A method for the production of isobutanol comprising:
(a) providing a recombinant microorganism comprising
i. an engineered isobutanol biosynthetic pathway,
ii. a deletion or disruption in an endogenous gene encoding GPD1, and
iii. an engineered glycerol-3-phosphate dehydrogenase (GPD) enzyme wherein the GPD has at least 90% identity to SEQ ID NO: 195 and comprises at least one substitution at a residue corresponding to position 44, 45, 73, or 129 of SEQ ID NO: 195, and
wherein the engineered GPD has a higher K M for NADH as compared to the K M of the endogenous GPD of the microorganism; and

(a) contacting the recombinant microorganism with at least one fermentable carbon substrate under conditions wherein isobutanol is produced.

2. The method of claim 1 , wherein the recombinant microorganism is grown under anaerobic conditions.

3. The method of claim 1 , wherein the enzyme comprises at least one substitution corresponding to position 73 of SEQ ID NO: 195.

4. The method of claim 1 , wherein the enzyme comprises at least one substitution corresponding to position 129 of SEQ ID NO:195.

5. The method of claim 1 , wherein the enzyme comprises a substitution corresponding to position 73 of SEQ ID NO:195 and a substitution corresponding to position 129 of SEQ ID NO:195.

6. The method of claim 1 , wherein the isobutanol biosynthetic pathway comprises at least one gene encoding a polypeptide that performs at least one of the following substrate to product conversions:
(a) pyruvate to acetolactate, as catalyzed by acetolactate synthase;
(b) acetolactate to 2,3-dihydroxyisovalerate, as catalyzed by acetohydroxy acid isomeroreductase;
(c) 2,3-dihydroxyisovalerate to α-ketoisovalerate, as catalyzed by dihydroxyacid dehydratase;
(d) α-ketoisovalerate to isobutyraldehyde, as catalyzed by a branched chain keto acid decarboxylase; and
(e) isobutyraldehyde to isobutanol, as catalyzed by branched-chain alcohol dehydrogenase.

7. The method of claim 1 , wherein the microorganism is from a genus selected from the group consisting of Clostridium, Zymomonas, Escherichia, Salmonella, Serratia, Envinia, Klebsiella, Shigella, Rhodococcus, Pseudomonas, Bacillus, Lactobacillus, Enterococcus, Alcaligenes, Paenibacillus, Arthrobacter, Corynebacterium, Brevibacterium, Schizosaccharomyces, Kluveromyces, Yarrowia, Pichia, Zygosaccharomyces, Debaryomyces, Candida, Brettanomyces, Pachysolen, Hansenula, Issatchenkia, Trichosporon Yamadazyma, and Saccharomyces.

8. The method of claim 7 , wherein the microorganism is from the genus Saccharomyces.

9. The method of claim 1 , wherein the microorganism comprises a ketol-acid reductoisomerase (KARI) that utilizes NADH.

10. The method of claim 1 , further comprising recovering the isobutanol.

11. The method of claim 10 , wherein the isobutanol is recovered by distillation, azeotropic distillation, liquid-liquid extraction, adsorption, gas stripping, membrane evaporation, pervaporation, or combinations thereof.

Assignees

• Butamax Advanced Biofuels Llc

Inventors

• Bhalla Ritu
• Chotani Gopal K
• Dauner Michael
• Nelson Mark J
• O'Keefe Daniel P
• Peres Caroline M
• Prasad Jahnavi Chandra
• Tomb Jean-Francois

Classifications

• C12Y101/01008

  Glycerol-3-phosphate dehydrogenase (NAD+) (1.1.1.8) · CPC title

• C12N15/52

  Genes encoding for enzymes or proenzymes · CPC title

• C12N9/0006

  acting on CH-OH groups as donors (1.1) · CPC title

• C12Y101/01094

  Glycerol-3-phosphate dehydrogenase (NAD(P)+)(1.1.1.94) · CPC title

• C12Y102/01012

  Glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) (1.2.1.12) · CPC title