Probe set for isothermal one-pot reaction for detecting strains with biologically active biosynthetic pathway and uses thereof
US-2024376553-A1 · Nov 14, 2024 · US
US9428796B2 · US · B2
| Field | Value |
|---|---|
| Publication number | US-9428796-B2 |
| Application number | US-201414322010-A |
| Country | US |
| Kind code | B2 |
| Filing date | Jul 2, 2014 |
| Priority date | Feb 22, 2012 |
| Publication date | Aug 30, 2016 |
| Grant date | Aug 30, 2016 |
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The present invention provides a method for indirectly and with high sensitivity detecting a particle dispersed and moving randomly in a solution using a luminescent probe. In the present invention, (a) a solution is prepared that contains a target particle and one or more types of a luminescent probe that directly or indirectly binds to the target particle, (b) a complex is formed that contains the target particle and the luminescent probe in the solution, (c) the complex is recovered by separating luminescent probe not bound to the target particle from the solution containing the complex, followed by (d) dissociating the luminescent probe from the recovered complex and mutually separating and separately recovering the free luminescent probe and target particle, (e) again binding a luminescent probe to the recovered target particle followed by dissociating the luminescent probe and mutually separating and recovering free luminescent probe and the target particle are repeated, followed by preparing a single measurement sample solution containing the total amount of the recovered free luminescent probe, and (f) the number of molecules of the luminescent probes in the measurement sample solution is calculated.
Opening claim text (preview).
The invention claimed is: 1. A method for indirectly detecting a particle dispersed and moving randomly in a solution using a luminescent probe, comprising: (a) preparing a solution containing a target particle to be detected and a first luminescent probe that directly or indirectly binds to the target particle; (b) forming a complex containing the target particle and the first luminescent probe in the solution; (c) removing first luminescent probes not bound to the target particles from the solution containing the complex, thereby recovering the complex; (d) dissociating the first luminescent probe from the recovered complex and separately separating the free first luminescent probe and the target particle, thereby separately recovering the free first luminescent probe and the target particle; (e) repeating one or more times a cycle consisting of the following operations (a′) to (d′): (a′) preparing a solution by adding a second luminescent probe to the target particle recovered by separating from the free first luminescent probe in the (d); (b′) forming a complex containing the target particles and the second luminescent probe in the solution following the (a′); (c′) separating second luminescent probes not bound to the target particle, thereby recovering the complex from the solution following the (b′); and, (d′) dissociating the second luminescent probe from the complex recovered in the (c′) followed by mutually separating and recovering free second luminescent probes and the target particle; followed by preparing a single measurement sample solution containing the total amount of the free first and second luminescent probes recovered in the (d) and the (d′); and, (f) calculating the number of molecules of the first and second luminescent probes in the measurement sample solution by a method consisting of detecting light emitted from the first and second luminescent probes in a photodetection region of an optical system of a confocal microscope or multi-photon microscope while moving the location of the photodetection region in the measurement sample solution using the optical system. 2. The method for detecting a target particle according to claim 1 , wherein dissociation of the second luminescent probe from the complex in the (d′) is carried out in a solution containing the free first luminescent probes recovered in the (d). 3. The method for detecting a target particle according to claim 1 , wherein after mixing the entirety of the solutions containing the free first and second luminescent probes recovered in each of the (d) and the (d′), a single measurement sample solution is prepared by carrying out concentration treatment. 4. The method for detecting a target particle according to claim 1 , wherein a separation probe that binds to the target particle independent of the first luminescent probe is further added to the solution in the (a), a complex formed in the (b) contains the target particle, the first luminescent probe and the separation probe, and a complex formed in the (b′) contains the target particle, the second luminescent probe and the separation probe, the target particle in the state of a complex bound to the separation probe in the (d) is recovered by separating from the free first luminescent probes, and the target particle in the state of a complex bound to the separation probe in the (d′) is recovered by separating from the free second luminescent probes. 5. The method for detecting a target particle according to claim 1 , wherein the target particle is a nucleic acid molecule. 6. The method for detecting a target particle according to claim 4 , wherein the target particle is a nucleic acid molecule, and the Tm value of a complex of the target particle and the separation probe is higher than the Tm value of a complex of the target particle and the first and second luminescent probes. 7. The method for detecting a target particle according to claim 6 , wherein dissociation of the first luminescent probe from the complex is carried out in the (d) by making the temperature of a solution containing the complex higher than the Tm value of a complex of the target particle and the first luminescent probe and lower than the Tm value of a complex of the target particle and the separation probe, and wherein dissociation of the second luminescent probe from the complex is carried out in the (d′) by making the temperature of a solution containing the complex higher than the Tm value of a complex of the target particle and the second luminescent probe and lower than the Tm value of a complex of the target particle and the separation probe. 8. The method for detecting a target particle according to claim 4 , wherein the first and second luminescent probes are naturally-occurring oligonucleotides having a luminescent substance bound thereto, and the separation probe is an oligonucleotide composed of peptide nucleic acids. 9. The method for detecting a target particle according to claim 4 , wherein forming of at least one covalent bond between the target particle and the separation probe in the complex formed in the (b) is carried out prior to the (d). 10. The method for detecting a target particle according to claim 4 , wherein recovery of the complex in the (c), recovery of the free first luminescent probes in the (d) and recovery of the free second luminescent probes in the (d′) are carried out by solid-liquid separation treatment using a solid phase carrier that directly or indirectly binds to the separation probe. 11. The method for detecting a target particle according to claim 1 , wherein the first luminescent probe of the (a) is two or more different luminescent probes.
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