Nanomechanical profiling of breast cancer molecular subtypes

Patent metadata

Field	Value
Publication number	US-12196740-B2
Application number	US-202318340912-A
Country	US
Kind code	B2
Filing date	Jun 26, 2023
Priority date	Oct 22, 2015
Publication date	Jan 14, 2025
Grant date	Jan 14, 2025

Abstract

The invention relates to a method for classifying a tissue sample obtained from mammary carcinoma. The method comprises determining a stiffness value for each of a plurality of points on said tissue sample, resulting in a stiffness distribution, and assigning said sample to a breast cancer subtype and nodal status based on said stiffness distribution.

First claim

We claim:

1. A method for classifying a tissue sample obtained from a mammary tumour, said method comprising
determining a stiffness value for each of a plurality of points on said tissue sample, particularly using a scanning probe microscope, more particular a atomic force microscope, resulting in a stiffness distribution, and
assigning said sample to a breast cancer molecular subtype based on said stiffness distribution.

2. The method according to claim 1 , wherein a high probability of being a luminal A subtype metastasized breast cancer is assigned to a sample exhibiting frequency maxima between 0.3 kPa and 0.9 kPa and/or a frequency maximum between 2.0 kPa and 2.5 kPa.

3. The method according to claim 1 , wherein a high probability of being a luminal A subtype metastasized breast cancer is assigned to a sample exhibiting frequency maxima at 0.375 kPa, 0.875 kPa and 2.075 kPa.

4. The method according to claim 1 , wherein a high probability of being a luminal B like Her2+ subtype metastasized breast cancer is assigned to a sample exhibiting a frequency maximum at 0.3 kPa and a frequency maximum between 1.7 kPa and 2.0 kPa.

5. The method according to claim 1 , wherein said pluralities of points are determined with a spatial resolution of at least 100 μm.

6. The method according to claim 1 , wherein said tissue sample is a tissue biopsy sample or a resection specimen.

7. The method according to claim 1 , wherein said plurality of points is arranged with an area or a line.

8. The method according to claim 1 , whereby said stiffness values of at least two different areas of said same sample are determined, and the distance between the geometrical centres of said areas is in the range of 100 μm to 1 mm.

9. The method according to claim 7 , wherein said line extends along the longitudinal axis of said tissue sample.

10. The method according to claim 1 , wherein said plurality of points comprises stiffness values in the range of 50 to 210000.

11. The method according to claim 1 , wherein said plurality of points is recorded within 6 minutes to 6 hours.

12. The method according to claim 1 , wherein said plurality of points is recorded at a range of rates from 1000 loading cycles per second to 0.1 loading cycles per second.

13. The method according to claim 1 , wherein said plurality of points is recorded with maximum loads ranging from 200 pN to 3 mN.

14. The method according to claim 1 , further comprising determining a marker on or comprised within said tissue sample, wherein said marker is selected from human estrogen receptor, human progesterone receptor, HER2/neu receptor and antigen Ki-67.

15. A system for classifying a tissue sample obtained from mammary carcinoma, comprising
a device, particularly an atomic force microscope, for determining stiffness values with a resolving power of at least 1 μm,
a programmed integrated circuit,

wherein
said programmed integrated circuit is equipped and designated to run a method according claim 1 .

16. Method for treating breast cancer, wherein the method comprises,
providing a tissue sample from a mammary tumour of a subject,
assigning the tissue sample to a breast cancer subtype by a method according to claim 1 ,
administering a treatment to the subject based on the determined subtype.

17. The method according to claim 16 , wherein
hormone therapy is administered to the subject in case of said mammary tumour has been classified as luminal A subtype non-metastasized breast cancer or luminal B subtype non-metastasized breast cancer,
chemotherapy is administered to the subject in case of said mammary tumour has been classified as basal subtype metastasized or non-metastasized breast cancer, chemotherapy, particularly in combination with hormone therapy, is administered to the subject in case of said mammary tumour has been classified as luminal A subtype metastasized breast cancer, luminal B subtype metastasized breast cancer, and/or
radiation therapy is administered to the subject in case of said mammary tumour has been classified as luminal A subtype metastasized breast cancer, luminal B subtype metastasized breast cancer, luminal B like Her2+ subtype metastasized breast cancer, or basal subtype metastasized breast cancer.

Assignees

• Univ Basel

Inventors

• Plodinec Marija
• Obermann Ellen
• Oertle Philipp
• Räz Christian

Classifications

• G01N33/57515

  of the breast · CPC title

• G01Q60/24

  AFM [Atomic Force Microscopy] or apparatus therefor, e.g. AFM probes · CPC title

• G01N3/068

  with optical indicating or recording means · CPC title

• G01Q60/366

  Nanoindenters, i.e. wherein the indenting force is measured · CPC title

• G01N3/00

  Investigating strength properties of solid materials by application of mechanical stress · CPC title