Background-suppressed STED nanoscope

Patent metadata

Field	Value
Publication number	US-11914129-B2
Application number	US-202017598725-A
Country	US
Kind code	B2
Filing date	Mar 26, 2020
Priority date	Mar 26, 2019
Publication date	Feb 27, 2024
Grant date	Feb 27, 2024

Abstract

The present invention is directed toward a system and method for STED nanography, which reduces background noise. To remove background noise from a STED image, the polarization of the STED beam is altered from that used to obtain the original image. A polarized image is obtained. This polarized image can then be subtracted from the original image to remove noise inherent to the image.

First claim

The invention claimed is:

1. A method of stimulated emission depletion (STED) microscopy using background suppression comprising:
generating from a STED microscope a first image of a specimen and of background noise;
changing the polarization of a beam from the STED microscope and obtaining a second image of the background noise;
subtracting the second image from the first image to eliminate the background noise; and,
generating a revised image of the specimen without the background noise.

2. The method of claim 1 wherein the first image is produced by using a first STED spot having a hollow core.

3. The method of claim 1 wherein the second image is produced by using a second STED spot having a hollow core where the hollow core is filled.

4. The method of claim 3 wherein the hollow core is filled by the components selected from the group consisting of optical components; passive phase modulation components; active phase modulation components, or a combination thereof.

5. The method of claim 4 wherein the optical components are selected from a group consisting of waveplates, electro-optic modulators, acousto-optic modulators, deformable mirrors, Faraday rotators, interferometers, and combinations thereof.

6. The method of claim 4 wherein the optical components are modulating the polarization of the first STED spot having a hollow core to produce the second STED spot where the hollow core is filled.

7. The method of claim 4 wherein the passive phase modulation components are selected from a group consisting of phase plates, wave plates, free form mirrors, interferometers, and a combination thereof.

8. The method of claim 4 wherein the active phase modulation components are selected from a group consisting of spatial light modulators, deformable mirrors, micro mirror arrays, and a combination thereof.

9. The method of claim 1 , wherein the revised image has enhanced clarity when compared to a reference image of a reference STED unable to produce the second image.

10. The method of claim 1 wherein subtracting the second image from the first image is performed using methods selected from a group consisting of image by image subtraction, pixel by pixel subtraction, real-time pixel by pixel subtraction, image-based drift correction, fiducial marker-based drift correction, median filtering of the background image, smoothing of the background image, and a combination thereof.

11. A method of claim 1 wherein subtracting the second image from the first image is performed using a subtraction factor.

12. The method of claim 11 wherein the subtraction factor is multiplied with the second image.

13. A method of claim 11 wherein the subtraction factor is estimated by confocal images obtained before and after STED imaging, widefield images obtained before and after STED imaging, estimated photobleaching values, total intensity of images obtained before and after STED imaging, and combinations thereof.

14. A method of claim 1 wherein the performance of eliminating the background noise is estimated by using methods selected from a group consisting of: (a) peak signal-to-background ratio (PSBR) where

P
⁢

⁢
S
⁢

⁢
B
⁢

⁢
R

=

Max
-
Min

Min

,

Max: maximum photon number in the image, Min: minimum photon number in the image; (b) signal-to-background ratio (SBR) where

S
⁢

⁢
B
⁢

⁢
R

=

on
-
fluorescence

off
-
fluorescence

;

(c)sum of squared background photon number (SSBPN) where SSBPN=Σ(BPN) 2 , BPN: background photon number;(d) spatial frequency analysis; and combinations thereof.

15. The method of claim 1 further comprising a non-transitory computer readable medium.

16. The method of claim 1 wherein the specimen is of a live cell, a fixed cell, a tissue, a solid-state sample, a liquid-state sample, a group of fluorescent molecules in solution, or a combination thereof.

17. The method of claim 1 where the background suppression is combined with multi-color imaging; fluorescence correlation spectroscopy, fluorescence lifetime imaging, fluorescence resonance energy transfer, correlative imaging with electron microscopy, reversible saturable optical fluorescence transitions microscopy, and combinations thereof.

18. A system for stimulated emission depletion microscopy using background suppression comprising:
a stimulated emission depletion (STED) microscope, wherein the STED microscope is configured for:
generating a first image of a specimen and of background noise;
changing the polarization of a beam from the STED microscope and obtaining a second image of the background noise; and
a non-transitory computer readable medium programmed for subtracting the second image from the first image to eliminate the background noise; and,
generating a final image of the specimen without the background noise.

19. The system of claim 18 wherein optical components for the STED microscope are selected from a group consisting of waveplates, electro-optic modulators, acousto-optic modulators, deformable mirrors, Faraday rotators, interferometers, and combinations thereof.

20. The system of claim 19 wherein the optical components are modulating the polarization of the first STED spot having a hollow core to produce the second STED spot where the hollow core is filled.

Assignees

• Univ Johns Hopkins

Inventors

• Ha Taekjip
• Lee Jong-Chan
• Ma Ye

Classifications

• G02B21/0076 Primary

  arrangements using fluorescence or luminescence · CPC title

• G01N21/6458 Primary

  Fluorescence microscopy (fluorescence microscopes per se G02B21/0076 and G02B21/16) · CPC title

• G02B21/008

  Details of detection or image processing, including general computer control · CPC title

• G02B21/0068

  arrangements using polarisation · CPC title

• G02B21/0072

  details concerning resolution or correction, including general design of CSOM objectives · CPC title