Bioinformatics systems, apparatuses, and methods executed on an integrated circuit processing platform
US-9483610-B2 · Nov 1, 2016 · US
US11416778B2 · US · B2
| Field | Value |
|---|---|
| Publication number | US-11416778-B2 |
| Application number | US-202017101495-A |
| Country | US |
| Kind code | B2 |
| Filing date | Nov 23, 2020 |
| Priority date | Dec 22, 2016 |
| Publication date | Aug 16, 2022 |
| Grant date | Aug 16, 2022 |
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A feature extractor for a convolutional neural network (CNN) is disclosed, wherein the feature extractor is deployed on a member of the group consisting of (1) a reconfigurable logic device, (2) a graphics processing unit (GPU), and (3) a chip multi-processor (CMP). A processing pipeline can be implemented on the member, where the processing pipeline implements a plurality convolution layers for the CNN, wherein each of a plurality of the convolutional layers comprises (1) a convolution stage that convolves first data with second data if activated and (2) a sub-sampling stage that performs a member of the group consisting of (i) a max pooling operation, (ii) an averaging operation, and (iii) a sampling operation on data received thereby if activated. The processing pipeline can be controllable with respect to which of the convolution stages are activated/deactivated and which of the sub-sampling stages are activated/deactivated when processing streaming data through the processing pipeline. The deactivated convolution and sub-sampling stages can remain instantiated within the processing pipeline but act as pass-throughs when deactivated. The processing pipeline performs feature vector extraction on the streaming data using the activated convolution stages and the activated sub-sampling stages.
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What is claimed is: 1. A machine-learning apparatus comprising: a feature extractor for a convolutional neural network (CNN), wherein the feature extractor is deployed on a member of the group consisting of (1) a reconfigurable logic device, (2) a graphics processing unit (GPU), and (3) a chip multi-processor (CMP), wherein the member comprises a processing pipeline that implements a plurality of convolution layers for the CNN, wherein each of a plurality of the convolutional layers comprises: a convolution stage that convolves first data with second data if activated; and a sub-sampling stage that performs a member of the group consisting of (i) a max pooling operation, (ii) an averaging operation, and (iii) a sampling operation on data received thereby if activated; wherein the processing pipeline is controllable with respect to (1) which of the convolution stages are activated, (2) which of the convolution stages are deactivated, (3) which of the sub-sampling stages are activated, and (4) which of the sub-sampling stages are deactivated when processing streaming data through the processing pipeline, wherein the deactivated convolution stages and the deactivated sub-sampling stages remain instantiated within the processing pipeline but act as pass-throughs when deactivated; and wherein the processing pipeline receives streaming data and performs feature vector extraction on the streaming data using the activated convolution stages and the activated sub-sampling stages. 2. The apparatus of claim 1 wherein each of a plurality of the sub-sampling stages comprises: max pooling logic; averaging logic; and sampling logic; wherein the sub-sampling stage is controllable with respect to whether the max pooling logic, the averaging logic, or the sampling logic is activated within the sub-sampling stage. 3. The apparatus of claim 1 wherein each of a plurality of the convolution stages comprises: correlation logic that convolves a sliding window of the first data with the second data. 4. The apparatus of claim 3 wherein a first convolution stage in the processing pipeline processes pixel data from an image as the first data and a plurality of weights as the second data. 5. The apparatus of claim 3 wherein each of a plurality of the convolution stages includes (1) a data shift register through which the first data is streamed and (2) a register that holds the second data, and wherein the correlation logic of each convolution stage comprises a plurality of multipliers and summation logic, wherein the multipliers multiply values in a plurality of cells of the data shift register and the register, and wherein the summation logic is connected to a plurality of outputs of the multipliers and sums the outputs from the multipliers. 6. The apparatus of claim 1 wherein the processing pipeline is controllable to deactivate at least one of the convolution stages or sub-sampling stages while a plurality of the convolution stages and a plurality of the sub-sampling stages are activated. 7. The apparatus of claim 1 wherein the processing pipeline is controllable to activate and deactivate different mixes of the convolution stages and sub-sampling stages based on whether the processing pipeline is to operate in a training mode or a classification mode. 8. The apparatus of claim 1 wherein the processing pipeline is controllable to disconnect power from a deactivated convolution stage or sub-sampling stage while retaining power to the activated convolution stages and sub-sampling stages. 9. The apparatus of claim 1 wherein the processing pipeline further comprises at least one of (1) an encryption engine, (2) a decryption engine, (3) a compression engine, (4) a decompression engine, or (5) a search engine. 10. The apparatus of claim 1 wherein the member comprises the reconfigurable logic device, wherein at least a portion of the processing pipeline resides on the reconfigurable logic device. 11. The apparatus of claim 10 wherein the member further comprises at least one of a GPU or a CMP, and wherein another portion of the processing pipeline resides on the at least one GPU or CMP. 12. The apparatus of claim 10 wherein the reconfigurable logic device comprises a field programmable gate array (FPGA), wherein at least a portion of the processing pipeline resides on the FPGA. 13. The apparatus of claim 1 wherein the member comprises the GPU, wherein at least a portion of the processing pipeline resides on the GPU. 14. The apparatus of claim 13 wherein the member further comprises at least one of a reconfigurable logic device or a CMP, and wherein another portion of the processing pipeline resides on the at least one reconfigurable logic device or CMP. 15. The apparatus of claim 1 wherein the member comprises the CMP, wherein at least a portion of the processing pipeline resides on the CMP. 16. A machine-learning apparatus comprising: a feature extractor for a convolutional neural network (CNN), wherein the feature extractor is deployed on a member of the group consisting of (1) a reconfigurable logic device, (2) a graphics processing unit (GPU), and (3) a chip multi-processor (CMP), wherein the member comprises a processing pipeline; wherein the processing pipeline implements a controllable number of convolution layers for the CNN, the processing pipeline comprising (1) a plurality of convolution stages that convolve first data with second data if activated and (2) a plurality of sub-sampling stages that perform a member of the group consisting of (i) a max pooling operation, (ii) an averaging operation, and (iii) a sampling operation on data received thereby if activated; wherein the processing pipeline is controllable with respect to (1) which of the convolution stages are activated, (2) which of the convolution stages are deactivated, (3) which of the sub-sampling stages are activated, and (4) which of the sub-sampling stages are deactivated when processing streaming data through the processing pipeline, wherein the deactivated convolution stages and the deactivated sub-sampling stages remain instantiated within the processing pipeline but act as pass-throughs when deactivated; and wherein the processing pipeline receives streaming data and performs feature vector extraction on the streaming data using the activated convolution stages and the activated sub-sampling stages. 17. The apparatus of claim 16 wherein each of a plurality of the sub-sampling stages comprises: max pooling logic; averaging logic; and sampling logic; wherein the sub-sampling stage is controllable with respect to whether the max pooling logic, the averaging logic, or the sampling logic is activated within the sub-sampling stage. 18. The apparatus of claim 16 wherein each of a plurality of the convolution stages comprises: correlation logic that convolves a sliding window of the first data with the second data. 19. The apparatus of claim 18 wherein a first convolution stage in the processing pipeline processes pixel data from an image as the first data and a plurality of weights as the second data. 20. A machine-learning method comprising: controlling which of a plurality of convolution stages and which of a plurality of sub-sampling stages are activated and deactivated within a processing pipeline that serves as a feature extractor for a convolutional neural network (CNN), wherein the processing pipeline is deployed on a member of the group consisting of (1) a reconfigurable logic device, (2) a graphics processing unit (GPU), and (3) a chip
Combinations of networks · CPC title
Convolutional networks [CNN, ConvNet] · CPC title
Supervised learning · CPC title
using a plurality of keys or algorithms · CPC title
Plurality of storage devices · CPC title
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