Mutant 4-hydroxyphenylacetate 3-hydroxylases and uses thereof

Patent metadata

Field	Value
Publication number	US-10988786-B2
Application number	US-201615764644-A
Country	US
Kind code	B2
Filing date	Sep 30, 2016
Priority date	Oct 2, 2015
Publication date	Apr 27, 2021
Grant date	Apr 27, 2021

Abstract

The present invention relates to genetically modified enzymes obtained by rational design of the active site binding pocket of the prototypic enzyme 4-hydroxyphenylacetate 3-hydroxylase (4HPA3H) for hydroxylating a 4-hydroxyphenyl compound to yield a 3,4-dihydroxyphenyl compound and to biotechnological methods including in vivo and in vitro methods using said enzymes or catalytically active fragments thereof. Further provided is a method either using a suitable oxidase or hydroxylase further enabling the subsequent site specific methylation of the 3,4-dihydroxyphenyl compound in a coupled enzymatic reaction by providing a suitable O-methyltransferase. Finally, compositions obtainable by the aforementioned methods are disclosed.

First claim

The invention claimed is:

1. A method for catalyzing the biotechnological conversion of at least one 4-hydroxyphenyl compound for producing at least one 3,4-dihydroxyphenol compound comprising:
(i) providing a mutant 4-hydroxyphenylacetate 3-hydroxylase or a catalytically active fragment thereof, comprising at least one mutation in an active site; wherein the sequence of wild-type 4-hydroxyphenylacetate 3-hydroxylase is set forth in SEQ ID NO: 98, in which the active site comprises residues I157, M293, Y301, and S462; wherein the sequence of the mutant 4-hydroxyphenylacetate 3-hydroxylase is at least 90% identical to SEQ ID NO: 98, and wherein the at least one mutation in the mutant active site comprises Y301F relative to the wild-type active site;
(ii) providing at least one 4-hydroxyphenyl compound;
(iii) reacting the at least one 4-hydroxyphenyl compound and the mutant 4-hydroxyphenylacetate 3-hydroxylase or the catalytically active fragment thereof under suitable reaction conditions for allowing the hydroxylation of the at least one 4-hydroxyphenyl compound by the mutant 4-hydroxyphenylacetate-3-hydroxylase or the catalytically active fragment thereof to yield at least one 3,4-dihydroxyphenol compound; and
(iv) optionally isolating and/or purifying the resulting at least one 3,4-dihydroxyphenol compound.

2. The method according to claim 1 , wherein the method is performed as a whole-cell approach, and wherein (i) is performed as follows:
(a1) providing at least one recombinant host cell comprising the mutant 4-hydroxyphenylacetate 3-hydroxylase or the catalytically active fragment thereof, or comprising at least one recombinant nucleic acid molecule encoding the mutant 4-hydroxyphenylacetate 3-hydroxylase or the catalytically active fragment thereof;
(b1) optionally, providing at least one recombinant host cell comprising at least one cofactor recycling enzyme or a catalytically active fragment thereof, or comprising at least one recombinant nucleic acid molecule encoding the at least one cofactor recycling enzyme or the catalytically active fragment thereof, wherein the at least one cofactor recycling enzyme is selected from the group consisting of:
a flavin reductase; and,
a formate dehydrogenase, and
(c1) cultivating said at least one recombinant host cell under suitable reaction conditions allowing the functional expression and/or catalytic activity of the mutant 4-hydroxyphenylacetate 3-hydroxylase.

3. The method according to claim 1 , wherein the method is performed in a cell-free in vitro system, and wherein (i) is performed as follows:
(a2) providing the mutant 4-hydroxyphenylacetate 3-hydroxylase or the catalytically active fragment thereof; and
(b2) optionally, providing at least one cofactor recycling enzyme or a catalytically active fragment thereof, wherein the at least one cofactor recycling enzyme is a flavin reductase or a formate dehydrogenase.

4. The method according to claim 1 , wherein the biotechnological conversion of the at least one 4-hydroxyphenyl compound for producing at least one 3,4-dihydroxyphenol compound is performed as a continuous flow process.

5. The method according to claim 1 , wherein the biotechnological conversion of the at least one 4-hydroxyphenyl compound for producing at least one 3,4-dihydroxyphenol compound is performed as a batch process.

6. The method according to claim 1 , wherein the mutant 4-hydroxyphenylacetate 3-hydroxylase is encoded by a nucleic acid.

7. The method according to claim 1 , wherein the hydroxylation in (iii) is catalyzed by the mutant 4-hydroxyphenylacetate 3-hydroxylase or the catalytically active fragment thereof under suitable reaction conditions to provide suitable regio- and product specificity so that there is essentially no further conversion of the resulting at least one 3,4-dihydroxyphenol compound.

8. The method according to claim 1 , wherein the at least one 4-hydroxyphenyl compound is independently selected from the group consisting of naringenin, phloretin, p-coumaric acid, ferulic acid, resveratrol, p-hydroxybenzoic acid, 2-hydroxycarbazole, umbelliferone, rheosmin, enantiomers thereof, and precursors or derivatives thereof.

9. The method according to claim 6 , wherein the sequence of the nucleic acid is set forth in SEQ ID NO: 44.

10. The method according to claim 1 , wherein the sequence of the mutant 4-hydroxyphenylacetate 3-hydroxylase consists of SEQ ID NO: 98 with the Y301F mutation in the active site.

Assignees

• Symrise Ag
• Leibniz Inst Fuer Pflanzenbiochemie

Inventors

• Wessjohann Ludger A
• Herrmann Susann
• Dippe Martin
• Geissler Torsten
• Geissler Katrin
• Ley Jakob Peter

Classifications

• C12N9/0071

  acting on paired donors with incorporation of molecular oxygen (1.14) · CPC title

• C12P17/06 Primary

  containing a six-membered hetero ring, e.g. fluorescein · CPC title

• C12Y114/14001

  Unspecific monooxygenase (1.14.14.1) · CPC title

• C12N9/1007

  Methyltransferases (general) (2.1.1.) · CPC title

• C12P17/10

  Nitrogen as only ring hetero atom · CPC title