Method of high spatial resolution determining a position of a singularized molecule which is excitable for emission of luminescence light

Patent metadata

Field	Value
Publication number	US-10962479-B2
Application number	US-201916377575-A
Country	US
Kind code	B2
Filing date	Apr 8, 2019
Priority date	Oct 10, 2016
Publication date	Mar 30, 2021
Grant date	Mar 30, 2021

Abstract

For spatial high resolution determining a position of a singularized molecule, which is excitable with excitation light for emission of luminescence light, in n spatial dimensions in a sample, the excitation light is directed onto the sample with an intensity distribution, which has a zero point and intensity increasing regions adjoining the zero point on both sides in each of the n spatial dimensions. The zero point is arranged at not more than n×3 different positions. The luminescence light emitted by the singularized molecule is separately registering for each of the different positions of the zero point. The position of the singularized molecule in the n spatial dimensions in the sample is deduced from intensities of the luminescence light separately registered for the not more than n×3 different positions of the zero point.

First claim

We claim:

1. A method of spatial high resolution determining, in n spatial dimensions, a position of a singularized molecule in a sample, the singularized molecule being excitable with excitation light for emission of luminescence light, and n being 1, 2 or 3, the method comprising
directing the excitation light with an intensity distribution onto the sample, the intensity distribution having a zero point and intensity increasing regions which are adjoining the zero point on both sides in each of the spatial dimensions,
separately registering the luminescence light emitted by the singularized molecule for each of the different positions of the zero point in the sample, and
deducing the position of the singularized molecule in the sample from intensities of the luminescence light separately registered for the different positions of the zero point,
wherein the zero point is arranged at not more than n×3 different positions in the sample to deduce the position of the singularized molecule in the n spatial dimensions from the intensities of the luminescence light separately registered for the different positions of the zero point,
wherein the preceding steps are repeated with decreasing distances between the different positions of the zero points in the sample, wherein, in each repetition of the steps, the different positions of the zero point in the sample are arranged around that position of the singularized molecule in the sample which has been deduced from the intensities of the luminescence light separately registered for the different positions of the zero point in the previous repetition of the steps.

2. The method of claim 1 , wherein the zero point is not arranged at more than (n×2)+1 different positions in the sample to determine the position of the singularized molecule in the n spatial dimensions from the intensities of the luminescence light separately registered for the different positions of the zero point.

3. The method of claim 2 , wherein the zero point is arranged at not more than n+2 different positions in the sample to deduce the position of the singularized molecule in the n spatial dimensions from the intensities of the luminescence light separately registered for the different positions of the zero point.

4. The method of claim 2 , wherein the different positions at which the zero point is arranged in the sample, in each of the n spatial dimensions in which the position of the singularized molecule in the sample is determined, include one position on each side of a center of a limited local area of the sample in which the singularized molecule is included.

5. The method of claim 4 , wherein the different positions at which the zero point is arranged in the sample, in each of the n spatial dimensions in which the position of the singularized molecule in the sample is determined, include one position in the center of the limited local area in addition to the one position on each side of the center.

6. The method of claim 4 , wherein the position of the singularized molecule is determined in n=2 spatial dimensions, wherein the different positions at which the zero point is arranged in the sample are a central position and three peripheral positions, wherein the three peripheral positions are arranged at three equal distances on a circular arc around the central position in a plane which is spanned by the n=2 spatial dimensions and runs through the central position.

7. The method of claim 4 , wherein the position of the singularized molecule is determined in n=3 spatial dimensions, wherein the different positions at which the zero point arranged in the sample, are a central position and four peripheral positions, wherein the four peripheral positions are arranged at six equal distances on a spherical shell around the central position.

8. The method of claim 1 , wherein a maximum intensity of the excitation light is adjusted such that a maximum distance of each of the positions of the zero point to each point between the different positions of the zero point in the sample is not longer than an extension of each of the intensity increasing regions in the direction of the distance, an intensity of the excitation light increasing to 90% of a saturation intensity of the excitation light over the extension of the respective one of the intensity increasing regions.

9. The method of claim 1 , wherein courses of an intensity of the excitation light in the intensity increasing regions adjoining the zero point are rotationally symmetric with regard to the zero point.

10. The method of claim 1 , wherein at least one of
the excitation light with regard to at least one of its wavelength or its polarization, and
the intensity increasing regions adjoining the zero point with regard to a course of an intensity of the excitation light in the n different spatial dimensions varies over the different positions of the zero point.

11. The method of claim 10 , wherein the at least one of the excitation light and the intensity increasing regions adjoining the zero point varies over the different positions of the zero point such that the position of the singularized molecule, at each point between the different positions of the zero point, is determined at a same precision in each of the n spatial dimensions.

12. The method of claim 1 , wherein the luminescence light is quasi-simultaneously separately registered for the different positions of the zero point in that the zero point is repeatedly shifted between the different positions.

13. The method of claim 1 , wherein the luminescence light is only separately registered for the different positions of the zero points until the intensities of the separately registered luminescence light are measured for the different positions of the zero point at a sufficient accuracy such that the position of the singularized molecule can be determined at a predetermined precision.

14. The method of claim 13 , wherein the predetermined precision is in a range between 0.5 and 20 nm.

15. The method of claim 1 , wherein, at a beginning of determining the position of the singularized molecule, an area of the sample including the singularized molecule is scanned with the zero point or a Gaussian intensity distribution of the excitation light in each of the n spatial dimensions, wherein the position of the singularized molecule in the sample is estimated from a course of an intensity of the luminescence light registered during scanning, and wherein the estimated position of the singularized molecule is used as a basis in defining the different positions of the zero point in the sample.

16. The method of claim 1 , wherein, at a beginning of determining the position of the singularized molecule, the excitation light is directed onto an area of the sample including the singularized molecule with a Gaussian intensity distribution point by point or on circular or spiral tracks, wherein the position of the singularized molecule is estimated from a course of an intensity of the luminescence light over the points or tracks, and wherein the estimated position of the singularized molecule is used as a basis in defining the different positions of the zero point in the sample.

17. The method of claim 1 , wherein, at a beginning of determining the position of the singularized molecule, an area of the sample including the singularized molecule is as a whole subjected to the excitation light and imaged on a spatially resolving detector, wherein the position of the singularized molecule is estimated from a spatial distribution of the luminescence light registered with the spatially reso

Assignees

• Max Planck Gesellschaft

Inventors

• Balzarotti Francisco
• Eilers Yvan
• Gwosch Klaus
• Hell Stefan W

Classifications

• G02B21/365

  Control or image processing arrangements for digital or video microscopes (G02B21/361, G02B21/362 take precedence) · CPC title

• G01N21/6428

  Measuring fluorescence of fluorescent products of reactions or of fluorochrome labelled reactive substances, e.g. measuring quenching effects, using measuring "optrodes" (in vivo A61B5/00; immunoassay G01N33/53) · CPC title

• G01N21/6458 Primary

  Fluorescence microscopy (fluorescence microscopes per se G02B21/0076 and G02B21/16) · CPC title

• G02B21/0076

  arrangements using fluorescence or luminescence · CPC title