Compounds and methods for detection of enzymes that remove formyl, succinyl, methyl succinyl or myristoyl groups from epsilon-amino lysine moieties

Patent metadata

Field	Value
Publication number	US-9963734-B2
Application number	US-201715464966-A
Country	US
Kind code	B2
Filing date	Mar 21, 2017
Priority date	Jan 13, 2011
Publication date	May 8, 2018
Grant date	May 8, 2018

Abstract

Provided is a compound that comprises the structure:

where SIG is a signaling molecule and R 3 is a formyl, a succinyl, a methyl succinyl, or a myristoyl. Also provided is a kit is provided that comprises the above compound, with instructions for determining the presence of the enzyme. Additionally, a method is provided for determining whether a sample has an enzyme that removes a succinyl, a methyl succinyl, a formyl, or a myristoyl moiety from an ε-amino of a lysine. Also provided is a method of determining whether a molecule inhibits an enzyme that removes a succinyl, a methyl succinyl, a formyl, or a myristoyl moiety from an ε-amino of a lysine.

First claim

What is claimed is:

1. A method for determining whether at least one molecule inhibits an enzyme that removes a succinyl moiety from an ε-amino of a lysine, the method comprising:
(a) combining the enzyme and a molecule with a compound having the formula

wherein
SIG is a fluorophore or luminescent moiety, and
m is an integer from 1 to 10;

(b) incubating the enzyme-molecule-compound mixture under conditions and for a time sufficient for the enzyme to remove the succinyl moiety in the absence of the molecule; and
(c) determining whether the succinyl moiety is removed from the compound to an equivalent degree that the succinyl moiety would be removed from the compound in the absence of the molecule,
wherein the failure of the removal of the succinyl moiety from the compound to an equivalent degree as in the absence of the molecule indicates that the molecule is an inhibitor of the enzyme.

2. The method of claim 1 ,
wherein the compound is a substrate for a peptidase after the enzyme cleaves the succinyl moiety from the compound but not if the succinyl moiety is not removed from the compound; and
wherein the determining step further comprises
(i) adding the peptidase to the mixture under conditions and for a time sufficient for the peptidase to cleave the resulting molecule between the nitrogen bound to SIG and the carbonyl carbon bound to said nitrogen, such that SIG generates an increased signal relative to the signal generated with the compound; and
(ii) determining whether SIG generates an increased signal relative to the signal generated with the compound,

wherein an increased signal indicates the removal of the succinyl moiety from the compound.

3. The method of claim 2 , wherein the peptidase is a trypsin.

4. The method of claim 1 , wherein the enzyme is a histone deacetylase (HDAC).

5. The method of claim 4 , wherein the HDAC is a sirtuin.

6. The method of claim 5 , wherein the sirtuin is SIRT5.

7. The method of claim 1 , wherein SIG is a luminescent moiety.

8. The method of claim 1 , wherein SIG is a fluorophore.

9. The method of claim 1 , wherein the compound is

10. The method of claim 1 , wherein a plurality of different molecules are subjected to the method simultaneously.

Assignees

• Enzo Life Sciences Inc

Inventors

• Howitz Konrad T
• Zhang Zhongda
• Kisielewski Anne
• Dale Elizabeth
• Patton Wayne Forrest

Classifications

• C07D311/16

  substituted in position 7 · CPC title

• C12Y305/01098

  Histone deacetylase (3.5.1.98), i.e. sirtuin deacetylase · CPC title

• C12Q1/34 Primary

  involving hydrolase · CPC title

• C07D493/10

  Spiro-condensed systems · CPC title

• G01N2333/98

  acting on amide bonds in linear amides (3.5.1) · CPC title