Methods and compositions for modulating apolipoprotein (a) expression

Patent metadata

Field	Value
Publication number	US-9884072-B2
Application number	US-201715401914-A
Country	US
Kind code	B2
Filing date	Jan 9, 2017
Priority date	May 17, 2012
Publication date	Feb 6, 2018
Grant date	Feb 6, 2018

Abstract

Disclosed herein are antisense compounds and methods for decreasing apo(a) to treat, prevent, or ameliorate diseases, disorders or conditions related to apo(a) or Lp(a). Certain diseases, disorders or conditions related to apo(a) or Lp(a) include inflammatory, cardiovascular and/or metabolic diseases, disorders or conditions. The antisense compounds disclosed herein can be used to treat such diseases, disorders or conditions in an individual in need thereof.

First claim

The invention claimed is:

1. A modified oligonucleotide, wherein the modified oligonucleotide is 14 to 25 linked nucleosides in length and has a nucleobase sequence comprising a portion of at least 14 contiguous nucleobases complementary to an equal length portion of nucleobases 3900 to 3923 of SEQ ID NO: 1, and wherein the nucleobase sequence of the modified oligonucleotide is at least 95% complementary to SEQ ID NO: 1.

2. The modified oligonucleotide of claim 1 , wherein the modified oligonucleotide consists of 18 to 24, 19 to 22, 15 to 25, 16 or 20 linked nucleosides.

3. The modified oligonucleotide of claim 1 , wherein the modified oligonucleotide has a nucleobase sequence comprising a portion of at least 16, at least 17, at least 18, at least 19, or at least 20 contiguous nucleobases complementary to an equal length portion of SEQ ID NO: 1.

4. The modified oligonucleotide of claim 1 , wherein the nucleobase sequence of the modified oligonucleotide is at least 96%, 97%, 98% or 99% complementary to SEQ ID NO: 1, or is 100% complementary to SEQ ID NO: 1.

5. The modified oligonucleotide of claim 1 , wherein the modified oligonucleotide has a nucleobase sequence comprising at least 14, at least 15, at least 16, at least 17, at least 18, at least 19, or 20 contiguous nucleobases of the nucleobase sequence of SEQ ID NO: 58.

6. The modified oligonucleotide of claim 1 , wherein at least one internucleoside linkage is a modified internucleoside linkage.

7. The modified oligonucleotide of claim 6 , wherein the at least one internucleoside linkage is a phosphorothioate internucleoside linkage.

8. The modified oligonucleotide of claim 1 , wherein the modified oligonucleotide comprises at least one modified sugar.

9. The modified oligonucleotide of claim 8 , wherein at least one modified sugar is a bicyclic sugar.

10. The modified oligonucleotide of claim 8 , wherein at least one modified sugar comprises a 2′— O-methoxyethyl, a constrained ethyl, a 3′-fluoro-HNA or a 4′— (CH 2 ) n —O-2′ bridge, wherein n is 1 or 2.

11. The modified oligonucleotide of claim 1 , wherein at least one nucleoside comprises a modified nucleobase.

12. The modified oligonucleotide of claim 11 , wherein the modified nucleobase is a 5-methylcytosine.

13. The modified oligonucleotide of claim 1 , wherein the modified oligonucleotide comprises:
a gap segment consisting of linked deoxynucleosides;
a 5′ wing segment consisting of linked nucleosides;
a 3′ wing segment consisting of linked nucleosides;
wherein the gap segment is positioned between the 5′ wing segment and the 3′ wing segment and wherein each nucleoside of each wing segment comprises a modified sugar.

14. The modified oligonucleotide of claim 13 , wherein the modified oligonucleotide consists of 20 linked nucleosides.

15. The modified oligonucleotide of claim 1 , wherein the modified oligonucleotide consists of 20 contiguous linked nucleosides of SEQ ID NO: 58 and the modified oligonucleotide further comprises:
a gap segment consisting of ten linked deoxynucleosides;
a 5′ wing segment consisting of five linked nucleosides;
a 3′ wing segment consisting of five linked nucleosides;
wherein the gap segment is positioned between the 5′ wing segment and the 3′ wing segment, wherein each nucleoside of each wing segment comprises a 2′-O-methoxyethyl sugar, wherein at least one internucleoside linkage is a modified internucleoside linkage and wherein each cytosine residue is a 5-methylcytosine.

16. The modified oligonucleotide of claim 15 , wherein the at least one internucleoside linkage is a phosphorothioate internucleoside linkage.

17. The modified oligonucleotide of claim 1 , wherein the modified oligonucleotide has a viscosity of less than 40 cP.

18. A modified oligonucleotide, wherein the modified oligonucleotide is 20 linked nucleosides in length and consists of the sequence of SEQ ID NO: 58, wherein the modified oligonucleotide further comprises:
a gap segment consisting of ten linked deoxynucleosides;
a 5′ wing segment consisting of five linked nucleosides; and
a 3′ wing segment consisting of five linked nucleosides;
wherein the gap segment is positioned between the 5′ wing segment and the 3′ wing segment; wherein each nucleoside of each wing segment comprises a 2′— O-methoxyethyl sugar; wherein at least one internucleoside linkage is a phosphorothioate internucleoside linkage; and wherein each cytosine is a 5-methylcytosine.

19. The modified oligonucleotide of claim 18 , wherein the modified oligonucleotide is a pharmaceutically acceptable salt.

20. The modified oligonucleotide of claim 19 , wherein the pharmaceutically acceptable salt is a sodium salt.

21. The modified oligonucleotide of claim 19 , wherein the pharmaceutically acceptable salt is a potassium salt.

22. A composition comprising the modified oligonucleotide of claim 19 and a pharmaceutically acceptable carrier or diluent.

23. A kit for reducing apo(a) and/or Lp(a) levels, wherein the kit comprises: (a) a modified oligonucleotide consisting of 14 to 25 linked nucleosides and comprising a nucleobase sequence comprising a portion of at least 14 contiguous nucleobases complementary to an equal length portion of nucleobases 3900 to 3923 of SEQ ID NO: 1, wherein the nucleobase sequence of the modified oligonucleotide is at least 95% complementary to SEQ ID NO: 1; and (b) instructions for use.

Assignees

• Ionis Pharmaceuticals Inc

Inventors

• Crooke Rosanne M
• Graham Mark J
• Freier Susan M
• Lim Marc
• Dibble Andrew

Classifications

• C12N2310/321

  2'-O-R Modification · CPC title

• C12N2310/3525

  MOE, methoxyethoxy · CPC title

• A61K31/7125

  Nucleic acids or oligonucleotides having modified internucleoside linkage, i.e. other than 3'-5' phosphodiesters · CPC title

• C12N2310/315

  Phosphorothioates · CPC title

• C12N2310/323

  modified ring structure · CPC title