Materials and methods for achieving differential lysis of mixtures with the aid of alkaline lysis and pressure cycling technology (PCT)

Patent metadata

Field	Value
Publication number	US-9809794-B2
Application number	US-201514625233-A
Country	US
Kind code	B2
Filing date	Feb 18, 2015
Priority date	Feb 18, 2014
Publication date	Nov 7, 2017
Grant date	Nov 7, 2017

Abstract

The subject invention provides a two-step protocol using pressure cycling technology (PCT) and alkaline lysis for differential extraction of mixtures. In a preferred embodiment the procedure is used in forensic DNA applications such as, for example, DNA testing in the case of rape.

First claim

We claim:

1. A method of separating male sperm cells and female epithelial cells in a sample embedded in a cotton swab, comprising:
immersing the sample in an alkaline solution comprising 0.2-0.8 N NaOH,
wherein said alkaline solution does not comprise deoxyribonuclease (DNase);

applying pressure cycling technology (PCT) to the sample at room temperature, the PCT comprising the application of alternating cycles of ambient and high pressure to the sample, said high pressure being between 10,000 psi and 45,000 psi;
neutralizing the sample with a buffer solution;
centrifuging the sample to produce an eluted epithelial fraction;
collecting and purifying the eluted epithelial fraction for female DNA processing, whereby a sperm fraction is left in the cotton swab; and
processing the sperm fraction remaining in the cotton swab.

2. The method of claim 1 , wherein the sample comprises the sperm and epithelial cells mixture embedded in a cotton swab collected from a forensic DNA test conducted in a rape case.

3. The method of claim 1 , wherein the concentration of NaOH is 0.4 N.

4. The method of claim 1 , wherein the high pressure is 20,000 psi.

5. The method of claim 4 , wherein the number of alternating pressure cycles is at least 10 and not more than 60.

6. The method of claim 5 , wherein the number of alternating pressure cycles is 10.

7. The method of claim 1 , wherein the neutralizing buffer solution is tris(hydroxymethyl) aminomethane (“Tris”), said buffer solution having a pH of 7.5.

8. The method of claim 1 , wherein the step of purifying the eluted epithelial fraction comprises:
treating the elution with a solution comprising phenol, chloroform, and isoamyl alcohol (collectively PCIA) at a ratio of 25:24:1; and
precipitating the epithelial cells into epithelial pellets using 3 M of sodium acetate and 95% ethanol; and
suspending the epithelial pellets in 1 X Tris-EDTA buffer havinga pH of 8.0.

9. The method of claim 1 , wherein the step of processing the sperm fraction remaining in the cotton swab comprises:
incubating the cotton swab embedded with the sperm fraction in an alkaline solution comprising 0.2-0.8 N NaOH;
neutralizing the sperm fraction with a buffer solution comprising Tris at a pH of 7.5;
centrifuging the sperm fraction to produce an eluted sperm fraction; and
processing the eluted sperm fraction for male DNA.

10. The method of claim 9 , wherein the incubation occurs at a temperature of at least 75° C. and not more than 95° C.

11. The method of claim 10 , wherein the incubation temperature is 95° C.

12. The method of claim 9 , wherein incubation occurs for a period of at least 2 minutes and not more than 5 minutes.

13. The method of claim 12 , wherein the incubation period is 5 minutes.

14. The method of claim 9 , wherein the step of processing the eluted sperm fraction comprises:
treating the eluted sperm fraction with PCIA at a ratio of 25:24:1;
precipitating the eluted sperm fraction into sperm pellets with 3 M of sodium acetate and 95% ethanol;
washing the sperm pellets with 70% ethanol followed by air-drying; and
suspending the sperm pellets in 1 X Tris-EDTA buffer having a pH of 8.0.

Assignees

• Univ Florida Int
• Pressure Biosciences Inc

Inventors

• Mccord Bruce R
• Nori Deepthi V
• Lawrence Nathan P
• Schumacher Richard

Classifications

• C12N15/1003

  Extracting or separating nucleic acids from biological samples, e.g. pure separation or isolation methods; Conditions, buffers or apparatuses therefor · CPC title

• C12N1/06 Primary

  Lysis of microorganisms · CPC title