Biocatalysts for the preparation of hydroxy substituted carbamates

Patent metadata

Field	Value
Publication number	US-9803178-B2
Application number	US-201615211990-A
Country	US
Kind code	B2
Filing date	Jul 15, 2016
Priority date	Nov 18, 2011
Publication date	Oct 31, 2017
Grant date	Oct 31, 2017

Abstract

The present disclosure relates to engineered ketoreductase polypeptides for the preparation of hydroxyl substituted carbamate compounds, and polynucleotides, vectors, host cells, and methods of making and using the ketoreductase polypeptides.

First claim

What is claimed is:

1. An engineered polynucleotide encoding a ketoreductase polypeptide capable of converting substrate compound (2), tert-butyl(1-oxo-1-phenylhex-5-yn-2-yl)carbamate, to product compound (1), tert-butyl(1-hydroxy-1-phenylhex-5-yn-2-yl)carbamate,

wherein the ketoreductase polypeptide comprises an amino acid sequence having at least 80% sequence identity to SEQ ID NO:4 and comprises a substitution at one or more positions selected from 40, 96, 145, 195, 199, or position 206, with the proviso that when X206 is F, the sequence further comprises one or more residue differences as compared to SEQ ID NO:4 selected from: X7S; X17M; X17Q; X17R; X23V; X27L; X29G; X60I; X64V; X71P; X87L; X94A; X94P; X94S; X95M; X96L; X96Y; X105G; X113I; X122A; X127R; X131S; X144V; X145L; X147I; X147L; X147Q; X150Y; X152G; X153G; X157C; X173L; X195A; X195G; X196M; X198S; X199H; X208R; X216R; X221S; X243S; X245I; X249F; X249G; and X249Y.

2. The engineered polynucleotide encoding the engineered ketoreductase polypeptide of claim 1 , wherein the amino acid sequence of said ketoreductase polypeptide comprises at least one substitution selected from X40R, V96L, V96Y, F145L, M195A, M195G, Y199H, M206F, and M206L, and one or more residue differences as compared to SEQ ID NO:4 selected from: X7S; X17M; X17Q; X17R; X23V; X27L; X29G; X60I; X64V; X71P; X87L; X94A; X94P; X94S; X95M; X105G; X113I; X122A; X127R; X131S; X144V; X145L; X147I; X147L; X147Q; X150Y; X152G; X153G; X157C; X173L; X196M; X198S; X208R; X216R; X221S; X243S; X245I; X249F; X249G; and X249Y.

3. The engineered polynucleotide encoding the engineered ketoreductase polypeptide of claim 1 , wherein the amino acid sequence of said ketoreductase polypeptide comprises X40R or X206L or F, and at least one or more residue differences as compared to SEQ ID NO:4 selected from: X17Q/R/M; X64V; X94P; X96L/Y; X144V; X147Q/I/L; X157C; X195A/G; X196M; and X199H.

4. The engineered polynucleotide encoding the engineered ketoreductase polypeptide of claim 1 , wherein the ketoreductase polypeptide is capable of converting the substrate compound (2) to the product compound (1) with at least 10 fold the activity of the reference polypeptide of SEQ ID NO:4, wherein the amino acid sequence comprises the substitution X40R or X206L or F, and one or more residue differences as compared to SEQ ID NO:4 selected from: X60I; X71P; X94P; X94A; X95M; X96L; X96Y; X127R; X144V; X145I; X150Y; X152G; X153G; X157C; X195A; X195G; X196M; X198S; X199H; X216R, X245I, X245F; X249Y; and X249F.

5. The engineered polynucleotide encoding the engineered ketoreductase polypeptide of claim 1 , wherein the ketoreductase polypeptide has increased thermal stability as compared to the reference polypeptide of SEQ ID NO:4 or 32, wherein the amino acid sequence comprises the features X40R or X206L or F, and one or more residue differences as compared to SEQ ID NO:4 selected from: X17Q; X17R; X17W; X64V; X71P; X87L; X94S; X94P; X147Q; X147I; X147L; X157C, X198S; X249Y; and X249F.

6. The engineered polynucleotide encoding the engineered ketoreductase polypeptide of claim 1 , wherein the ketoreductase polypeptide is capable of forming product syn-tert-butyl(1-hydroxy-1-phenylhex-5-yn-2-yl)carbamate compounds (1a) and (1c)

in diastereomeric excess of anti-tert-butyl(1-hydroxy-1-phenylhex-5-yn-2-yl)carbamate compounds (1b) and (1d).

7. The engineered polynucleotide encoding the engineered ketoreductase polypeptide of claim 6 , wherein the amino acid sequence of the ketoreductase polypeptide comprises or more residue differences as compared to SEQ ID NO:4 selected from: X17Q; X40R; X64V; X71P; X87L; X96L/Y; X147I; X157C; X195A/G; X196M; X199H; X206F/L; and X249F.

8. The engineered polynucleotide encoding the engineered ketoreductase polypeptide of claim 7 , wherein said ketoreductase polypeptide is capable of forming product compounds (1a) and (1c) in a diastereomeric ratio of at least 50 over compounds (1b) and (1d).

9. An expression vector comprising the engineered polynucleotide of claim 1 .

10. The expression vector of claim 9 , comprising at least one control sequence.

11. The expression vector of claim 10 , in which the control sequence is a promoter.

12. A host cell comprising the engineered polynucleotide of claim 1 .

13. A host cell comprising the expression vector of claim 9 .

14. The host cell of claim 12 , wherein said host cell is E. coli.

15. The host cell of claim 13 , wherein said host cell is E. coli.

16. A method of preparing the engineered polypeptide comprising culturing the host cell of claim 12 , under conditions suitable for expression of the polypeptide, optionally further comprising isolating the engineered polypeptide.

17. A method of preparing the engineered polypeptide comprising culturing the host cell of claim 13 , under conditions suitable for expression of the polypeptide, optionally further comprising isolating the engineered polypeptide.

18. A method of preparing the engineered polypeptide comprising culturing the host cell of claim 14 , under conditions suitable for expression of the polypeptide, optionally further comprising isolating the engineered polypeptide.

19. A method of preparing the engineered polypeptide comprising culturing the host cell of claim 15 , under conditions suitable for expression of the polypeptide, optionally further comprising isolating the engineered polypeptide.

Assignees

• Codexis Inc

Inventors

• Cabirol Fabien Louis
• Chen Haibin
• Gohel Anupam
• Collier Steven J
• Smith Derek J
• Kosjek Birgit
• Janey Jacob

Classifications

• C12P41/002

  by oxidation/reduction reactions · CPC title

• C12N9/0006 Primary

  acting on CH-OH groups as donors (1.1) · CPC title

• C12Y101/01184

  Carbonyl reductase (NADPH) (1.1.1.184) · CPC title

• C12P13/00

  Preparation of nitrogen-containing organic compounds · CPC title

• C12P41/00

  Processes using enzymes or microorganisms to separate optical isomers from a racemic mixture · CPC title