Methods of treating cancer

Patent metadata

Field	Value
Publication number	US-9730925-B2
Application number	US-201214346359-A
Country	US
Kind code	B2
Filing date	Sep 30, 2012
Priority date	Sep 30, 2011
Publication date	Aug 15, 2017
Grant date	Aug 15, 2017

Abstract

This invention relates to methods of treating cancer in a subject such as a human and determining at least one of the following in a sample from the subject, such as a human: (a) the presence or absence of a mutation at the alanine 677 (A677) residue in EZH2; or (b) the presence or absence of a mutation at the tyrosine 641 (Y641) residue in EZH2; or (c) the presence or absence of an increased level of H3K27me3 as compared to a control, and administering to said human an effective amount of an EZH2 inhibitor or a pharmaceutically acceptable salt thereof if at least one of the A677 mutation, Y641 mutation, or increased level of H3K27me3 is present in the sample.

First claim

What is claimed is:

1. A method of treating cancer in a human in need thereof, comprising determining the presence of a mutation at the alanine 677 (A677) residue in Enhancer of Zeste Homolog 2 (EZH2) in a sample from said human; and administering to said human having a sample determined to have a presence of a mutation in A677 in EZH2 an effective amount of an EZH2 inhibitor or a pharmaceutically acceptable salt thereof, wherein the EZH2 inhibitor is a compound of Formula (I):

wherein:
W is N or CR 2 ;
X and Z are each independently selected from the group consisting of hydrogen, (C 1 -C 8 )alkyl, (C 2 -C 8 )alkenyl, (C 2 -C 8 )alkynyl, unsubstituted or substituted (C 3 -C 8 )cycloalkyl, unsubstituted or substituted (C 3 -C 8 )cycloalkyl-(C 1 -C 8 )alkyl or —(C 2 -C 8 )alkenyl, unsubstituted or substituted (C 5 -C 8 )cycloalkenyl, unsubstituted or substituted (C 5 -C 8 )cycloalkenyl-(C 1 -C 8 )alkyl or —(C 2 -C 8 )alkenyl, (C 6 -C 10 )bicycloalkyl, unsubstituted or substituted heterocycloalkyl, unsubstituted or substituted heterocycloalkyl-(C 1 -C 8 )alkyl or —(C 2 -C 8 )alkenyl, unsubstituted or substituted aryl, unsubstituted or substituted aryl-(C 1 -C 8 )alkyl or —(C 2 -C 8 )alkenyl, unsubstituted or substituted heteroaryl, unsubstituted or substituted heteroaryl-(C 1 -C 8 )alkyl or —(C 2 -C 8 )alkenyl, halogen, cyano, —COR a , —CO 2 R a , —CONR a R b , —CONR a NR a R b , —SR a , —SOR a , —SO 2 R a , —SO 2 NR a R b , nitro, —NR a R b , —NR a C(O)R b , —NR a C(O)NR a R b , —NR a C(O)OR a , —NR a SO 2 R b , —NR a SO 2 NR a R b , —NR a NR a R b , —NR a NR a C(O)R b , —NR a NR a C(O)NR a R b , —NR a NR a C(O)OR a , —OR a , —OC(O)R a , and —OC(O)NR a R b ;
Y is hydrogen or halogen;
R 1 is (C 1 -C 8 )alkyl, (C 2 -C 8 )alkenyl, (C 2 -C 8 )alkynyl, unsubstituted or substituted (C 3 -C 8 )cycloalkyl, unsubstituted or substituted (C 3 -C 8 )cycloalkyl-(C 1 -C 8 )alkyl or —(C 2 -C 8 )alkenyl, unsubstituted or substituted (C 5 -C 8 )cycloalkenyl, unsubstituted or substituted (C 5 -C 8 )cycloalkenyl-(C 1 -C 8 )alkyl or —(C 2 -C 8 )alkenyl, unsubstituted or substituted (C 6 -C 10 )bicycloalkyl, unsubstituted or substituted heterocycloalkyl or —(C 2 -C 8 )alkenyl, unsubstituted or substituted heterocycloalkyl-(C 1 -C 8 )alkyl, unsubstituted or substituted aryl, unsubstituted or substituted aryl-(C 1 -C 8 )alkyl or —(C 2 -C 8 )alkenyl, unsubstituted or substituted heteroaryl, unsubstituted or substituted heteroaryl-(C 1 -C 8 )alkyl or —(C 2 -C 8 )alkenyl, —COR a , —CO 2 R a , —CONR a R b , or —CONR a NR a R b ;
When present R 2 is hydrogen, (C 1 -C 8 )alkyl, trifluoromethyl, alkoxy, or halogen, in which said (C 1 -C 8 )alkyl may be substituted with one to two groups selected from amino and (C 1 -C 3 )alkylamino;
R 7 is hydrogen, (C 1 -C 3 )alkyl, or alkoxy; R 3 is hydrogen, (C 1 -C 8 )alkyl, cyano, trifluoromethyl, —NR a R b , or halogen;
R 6 is selected from the group consisting of hydrogen, halo, (C 1 -C 8 )alkyl, (C 2 -C 8 )alkenyl, —B(OH) 2 , substituted or unsubstituted (C 2 -C 8 )alkynyl, unsubstituted or substituted (C 3 -C 8 )cycloalkyl, unsubstituted or substituted (C 3 -C 8 )cycloalkyl-(C 1 -C 8 )alkyl, unsubstituted or substituted (C 5 -C 8 )cycloalkenyl, unsubstituted or substituted (C 5 -C 8 )cycloalkenyl-(C 1 -C 8 )alkyl, (C 6 -C 10 )bicycloalkyl, unsubstituted or substituted heterocycloalkyl, unsubstituted or substituted heterocycloalkyl-(C 1 -C 8 )alkyl, unsubstituted or substituted aryl, unsubstituted or substituted aryl-(C 1 -C 8 )alkyl, unsubstituted or substituted heteroaryl, unsubstituted or substituted heteroaryl-(C 1 -C 8 )alkyl, cyano, —COR a , —CO 2 R a , —CONR a R b , —CONR a NR a R b , —SR a , —SOR a , —SO 2 R a , —SO 2 NR a R b , nitro, —NR a R b , —NR a C(O)R b , —NR a C(O)NR a R b , —NR a C(O)OR a , —NR a SO 2 R b , —NR a SO 2 NR a R b , —NR a NR a R b , —NR a NR a C(O)R b , —NR a NR a C(O)NR a R b , —NR a NR a C(O)OR a , —OR a , —OC(O)R a , and —OC(O)NR a R b ;
wherein any (C 1 -C 8 )alkyl, (C 2 -C 8 )alkenyl, (C 2 -C 8 )alkynyl, cycloalkyl, cycloalkenyl, bicycloalkyl, heterocycloalkyl, aryl, or heteroaryl group is optionally substituted by 1, 2 or 3 groups independently selected from the group consisting of —O(C 1 -C 6 )alkyl(R c ) 1-2 , —S(C 1 -C 6 )alkyl(R c ) 1-2 , —(C 1 -C 6 )alkyl(R c ) 1-2 , (C 1 -C 8 )alkyl-heterocycloalkyl, (C 3 -C 8 )cycloalkyl-heterocycloalkyl, halogen, (C 1 -C 6 )alkyl, (C 3 -C 8 )cycloalkyl, (C 5 -C 8 )cycloalkenyl, (C 1 -C 6 )haloalkyl, cyano, —COR a , —CO 2 R a , —CONR a R b , —SR a , —SOR a , —SO 2 R a , —SO 2 NR a R b , nitro, —NR a R b , —NR a C(O)R b , —NR a C(O)NR a R b , —NR a C(O)OR a , —NR a SO 2 R b , —NR a SO 2 NR a R b , —OR a , —OC(O)R a , —OC(O)NR a R b , heterocycloalkyl, aryl, heteroaryl, aryl(C 1 -C 4 )alkyl, and heteroaryl(C 1 -C 4 )alkyl;
wherein any aryl or heteroaryl moiety of said aryl, heteroaryl, aryl(C 1 -C 4 )alkyl, or heteroaryl(C 1 -C 4 )alkyl is optionally substituted by 1, 2 or 3 groups independently selected from the group consisting of halogen, (C 1 -C 6 )alkyl, (C 3 -C 8 )cycloalkyl, (C 5 -C 8 )cycloalkenyl, (C 1 -C 6 )haloalkyl, cyano, —COR a , —CO 2 R a , —CONR a R b , —SR a , —SOR a , —SO 2 R a , —SO 2 NR a R b , nitro, —NR a R b , —NR a C(O)R b , —NR a C(O)NR a R b , —NR a C(O)OR a , —NR a SO 2 R b , —NR a SO 2 NR a R b , —OR a , —OC(O)R a , and —OC(O)NR a R b ;

each R c is independently (C 1 -C 4 )alkylamino, —NR a SO 2 R b , —SOR a , —SO 2 R a , —NR a C(O)OR a , —NR a R b , or —CO 2 R a ;
R a and R b are each independently hydrogen, (C 1 -C 8 )alkyl, (C 2 -C 8 )alkenyl, (C 2 -C 8 )alkynyl, (C 3 -C 8 )cycloalkyl, (C 5 -C 8 )cycloalkenyl, (C 6 -C 10 )bicycloalkyl, heterocycloalkyl, aryl, heteroaryl, wherein said (C 1 -C 8 )alkyl, (C 2 -C 8 )alkenyl, (C 2 -C 8 )alkynyl, cycloalkyl, cycloalkenyl, bicycloalkyl, heterocycloalkyl, aryl, or heteroaryl group is optionally substituted by 1, 2 or 3 groups independently selected from halogen, hydroxyl, (C 1 -C 4 )alkoxy, amino, (C 1 -C 4 )alkylamino, ((C 1 -C 4 )alkyl)((C 1 -C 4 )alkyl)amino, —CO 2 H, —CO 2 (C 1 -C 4 )alkyl, —CONH 2 , —CONH(C 1 -C 4 )alkyl, —CON((C 1 -C 4 )alkyl)((C 1 -C 4 )alkyl), —SO 2 (C 1 -C 4 )alkyl, —SO 2 NH 2 , —SO 2 NH(C 1 -C 4 )alkyl, or —SO 2 N((C 1 -C 4 )alkyl)((C 1 -C 4 )alkyl);
or R a and R b taken together with the nitrogen to which they are attached represent a 5-8 membered saturated or unsaturated ring, optionally containing an additional heteroatom selected from oxygen, nitrogen, and sulfur, wherein said ring is optionally substituted by 1, 2, or 3 groups independently selected from (C 1 -C 4 )alkyl, (C 1 -C 4 )haloalkyl, amino, (C 1 -C 4 )alkylamino, ((C 1 -C 4 )alkyl)((C 1 -C 4 )alkyl)amino, hydroxyl, oxo, (C 1 -C 4 )alkoxy, and (C 1 -C 4 )alkoxy(C 1 -C 4 )alkyl, wherein said ring is optionally fused to a (C 3 -C 8 )cycloalkyl, heterocycloalkyl, aryl, or heteroaryl ring;
or R a and R b taken together with the nitrogen to which they are attached represent a 6- to 10-membered bridged bicyclic ring system optionally fused to a (C 3 -C 8 )cycloalkyl, heterocycloalkyl, aryl, or heteroaryl ring;
or a pharmaceutically acceptable salt thereof.

2. The method of claim 1 , wherein the EZH2 inhibitor is a compound of Formula (I) wherein W is CR 2 .

3. The method of claim 1 , wherein the EZH2 inhibitor is Compound B:

or a pharmaceutically acceptable salt thereof.

4. The method of claim 1 , wherein the A677 mutation is A677G.

5. The method of claim 1 , wherein the sample comprises at least one cancer cell.

6. The method of c

Assignees

• Glaxosmithkline Llc
• Glaxomithkline Llc

Inventors

• Creasy Caretha L
• Ganji Gopinath
• Mccabe Michael T
• Smitheman Kimberly N

Classifications

• A61P35/00

  Antineoplastic agents · CPC title

• C12Q1/6886

  for cancer (immunoassay for cancer G01N33/575) · CPC title

• C12Q2600/154

  Methylation markers · CPC title

• C12Q2600/156

  Polymorphic or mutational markers · CPC title

• A61P35/02

  specific for leukemia · CPC title