Reagents useful for synthesizing rhodamine-labeled oligonucleotides
US-9040674-B2 · May 26, 2015 · US
US9702824B2 · US · B2
| Field | Value |
|---|---|
| Publication number | US-9702824-B2 |
| Application number | US-201314384081-A |
| Country | US |
| Kind code | B2 |
| Filing date | Mar 8, 2013 |
| Priority date | Mar 9, 2012 |
| Publication date | Jul 11, 2017 |
| Grant date | Jul 11, 2017 |
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Provided herein are fluorescent sensor agents, and methods of use and manufacture thereof. In particular, sensor agents are provided that exhibit a detectable change in fluorescence (e.g., fluorescence intensity) upon alteration of the pH of the surrounding environment (e.g., upon moving from one pH environment to another).
Opening claim text (preview).
We claim: 1. A pH sensor agent comprising: wherein R1 and R2 are independently alkyl sulfonic acids, and wherein R3-R6 are independently: H, F, Cl, Br, I, OH, an alkoxide group, an alkyl group, a heteroalkyl group, an aryl group, CO 2 H, SO 3 H, L-CO 2 H, L-SO 3 H, L-W, or L-CS; wherein L is a linear, branched, and/or cyclic covalent linkage comprising 0-16 non-hydrogen atoms and comprising any suitable combination of: ester, acid, sulphonic acid, sulfamide, amine, amide, alcohol, ether, thioether, halide, single bonds, double bonds, triple bonds, and aromatic bonds; wherein W is a reactive group; wherein X is: O, CR 17 , MR 17 ; wherein R 17 is: H, F, Cl, Br, I, OH, an alkoxide group, an alkyl group, an aryl group, CO 2 H, SO 3 H, L-CO 2 H, L-SO 3 H, L-Y, or L-CS; and wherein M is selected from C, N, O, Si, P, S, Ge, As, Se, Sn, Sb, Te, Pb, Bi, and Po. 2. The pH sensor agent of claim 1 , wherein R1 and R2 are CH 2 (CH 2 ) n SO 3 − , wherein n=0-25. 3. A composition comprising an entity of interest tethered to a pH sensor agent of claim 1 . 4. A method of detecting the pH of an environment comprising: a) contacting a pH sensor agent of claim 1 to said environment; b) detecting fluorescence from said pH sensor agent; and c) correlating said fluorescence to said pH. 5. A method of monitoring changes in the pH of an environment comprising: a) contacting a pH sensor agent of claim 1 with said environment; b) detecting fluorescence from said pH sensor agent over time; and c) correlating changes in fluorescence to changes in pH. 6. A method of detecting movement of an entity of interest from a first pH environment to a second pH environment comprising: a) contacting a pH sensor agent of claim 1 to said first pH environment; b) detecting fluorescence of said pH sensor agent in said first pH environment; c) monitoring said fluorescence of said pH sensor agent, wherein a change in said fluorescence indicates movement of said pH sensor agent to a second pH environment. 7. The pH sensor agent of claim 2 , wherein n=1-6. 8. The pH sensor of claim 7 , wherein R1 and R2 are alkyl sulfonic acids of the same length. 9. The pH sensor of claim 7 , wherein R1 and R2 are butyl sulphonic acid sulfonic acid. 10. The pH sensor of claim 7 , wherein R3, R5, and R6 are hydrogen. 11. The pH sensor of claim 10 , comprising a compound of: 12. The pH sensor of claim 10 , comprising a compound of:
Fluorescence · CPC title
Pyronines {; Xanthon, thioxanthon, selenoxanthan, telluroxanthon dyes} · CPC title
Indicating pH value · CPC title
Phthaleins containing amino groups {; Phthalanes; Fluoranes; Phthalides; Rhodamine dyes; Phthaleins having heterocyclic aryl rings; Lactone or lactame forms of triarylmethane dyes} · CPC title
for investigating pH value · CPC title
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