Brassica plants yielding oils with a low alpha linolenic acid content

Patent metadata

Field	Value
Publication number	US-9695434-B2
Application number	US-201213685588-A
Country	US
Kind code	B2
Filing date	Nov 26, 2012
Priority date	May 25, 2010
Publication date	Jul 4, 2017
Grant date	Jul 4, 2017

Abstract

Brassica plants producing oils with a low alpha-linolenic acid content and methods for producing such plants are described.

First claim

What is claimed is:

1. A Brassica plant comprising a modified allele at a fatty acid desaturase 3D (fad3D) locus, a fatty acid desaturase 3E (fad3E) locus, a fatty acid desaturase 3A (fad3A) locus and a fatty acid desaturase 3B (fad3B) locus wherein: (i) said modified allele results in the production of a FAD3 polypeptide having reduced desaturase activity relative to a corresponding wild-type FAD3 polypeptide; (ii) said fad3D locus has at least 90% identity to SEQ ID NO:32; (iii) said fad3E locus has at least 90% identity to SEQ ID NO:1; (iv) said fad3A locus comprises a nucleic acid selected from the group consisting of (a) a nucleic acid encoding a FAD3A polypeptide having a cysteine substituted for arginine at position 275 and (h) a nucleic acid encoding a truncated FAD3A polypeptide; (v) said fad3B locus comprises a nucleic acid selected from the group consisting of (a) a nucleic acid having a mutation in an exon-intron splice site recognition sequence and (b) a nucleic acid encoding a truncated FAD3B polypeptide and (vi) wherein said plant produces seeds yielding an oil having a stearic acid content of 0.95% to 3.9% and an alpha-linolenic acid (ALA) content of 0.5% to 1.95%.

2. The plant of claim 1 , wherein said fad3D modified allele comprises a nucleic acid having a deletion of an exon or a portion thereof.

3. The plant of claim 2 , wherein said deletion is in within exon 1 of said nucleic acid.

4. The plant of claim 1 , wherein said fad3D modified allele comprises a nucleotide sequence having at least 95% sequence identity to the nucleic acid sequence set forth in SEQ ID NO:32.

5. The plant of claim 1 , wherein said fad3E modified allele comprises a nucleic acid encoding a truncated FAD3E polypeptide.

6. The plant of claim 1 , wherein said fad3E modified allele comprises a nucleic acid encoding a FAD3E polypeptide having a non-conservative substitution of a residue affecting substrate specificity.

7. The plant of claim 1 , wherein said fad3E modified allele comprises a nucleic acid encoding a FAD3E polypeptide having a non-conservative substitution of a residue affecting catalytic activity.

8. The plant of claim 1 , wherein said fad3E modified allele comprises a mutation in a splice donor site.

9. The plant of claim 1 , wherein said fad3E modified allele comprises a nucleotide sequence having at least 95% sequence identity to the nucleotide sequence set forth in SEQ ID NO: 1.

10. The plant of claim 1 , wherein said fad3D modified allele comprises a nucleic acid encoding a truncated FAD3D polypeptide.

11. The plant of claim 1 , said plant producing seeds yielding an oil having an alpha-linolenic acid (ALA) content of less than 1.5%.

12. The plant of claim 1 , said plant producing seeds yielding an oil having a stearic acid content of less than 2.5%.

13. The plant of claim 1 , said plant further comprising
a modified allele at a delta-12 fatty acid desaturase (fad2) locus, said fad2 modified allele comprising a nucleic acid selected from the group consisting of a nucleic acid encoding a FAD2 polypeptide having a lysine substituted for glutamic acid in a His-Glu-Cys-Gly-His motif (SEQ ID NO:26),
a nucleic acid encoding a FAD2 polypeptide having a glutamic acid substituted for glycine in the DRDYGILNKV (SEQ ID NO:28) motif, and a nucleic acid encoding a FAD2 polypeptide having a histidine substituted for leucine in a KYLNNP motif (SEQ ID NO:27).

14. The plant of claim 1 , said plant further comprising at least one modified allele at a fatty acyl-acyl-ACP thioesterase B (fatB) locus, wherein said fatB modified allele results in the production of a FATB polypeptide having reduced thioesterase activity relative to a corresponding wild-type FATB polypeptide.

15. The plant of claim 1 , wherein said plant is a Brassica napus, Brassica juncea , or Brassica rapa plant.

16. The plant of claim 1 , wherein said fad3D modified allele is a mutant allele.

17. Progeny of the plant of claim 1 , said progeny comprising said modified alleles.

18. Progeny of the plant of claim 2 , said progeny comprising said modified alleles.

19. Seeds of the plant of claim 1 , wherein the seeds comprise said modified fad3D, fad3E, fad3A and fad3B alleles.

20. Seeds of the plant of claim 2 , wherein the seeds comprise said modified fad3D, fad3E, fad3A and fad3B alleles.

21. A method of producing an oil, said method comprising:
(a) crushing seeds produced from at least one Brassica plant of claim 1 , said plant comprising said fad3D, fad3E, fad3A and fad3B modified alleles; and
(b) extracting said oil from said crushed seeds, said oil having, after refining, bleaching, and deodorizing, a stearic acid content of 0.95% to 3.9%.

22. A method of making a Brassica plant line, said method comprising:
(a) providing a population of plants;
(b) identifying one or more plants in said population containing a modified allele at a fatty acid desaturase 3E (fad3E) locus, a fatty acid desaturase 3D (fad3D) locus, a fatty acid desaturase 3A (fad3A) locus or a fatty acid desaturase 3B (fad3B) locus wherein said modified allele results in the production of a FAD3E, FAD3D, FAD3A, or FAD3B polypeptide having reduced desaturase activity relative to a corresponding wild-type FAD3 polypeptide;
(c) crossing one or more of said identified plants with itself or a different plant to produce seed;
(d) crossing at least one progeny plant grown from said seed with itself or a different plant; and
(e) repeating steps (c) and (d) for an additional 0-5 generations to make said plant line, wherein said modified allele at said fad3E locus, fad3D, fad3A and fad3B locus is present in said plant line, and wherein said plant line produces seeds yielding an oil having a stearic acid content of 0.95% to 3.9% and an alpha-linolenic acid (ALA) content of 0.5% to 1.95%.

23. The plant of claim 1 , said plant further comprising a modified allele selected from the group consisting of a modified allele at a fatty acyl-acyl-ACP thioesterase A2 (fatA2) locus, wherein said fatA2 modified allele results in the production of a FATA2 polypeptide having reduced thioesterase activity relative to a corresponding wild-type FATA2 polypeptide, and a modified allele at a fatty acyl-acyl-ACP thioesterase B (fatB) locus, wherein said fatB modified allele results in the production of a FATB polypeptide having reduced thioesterase activity relative to a corresponding wild-type FATB polypeptide.

24. The plant of claim 11 , said plant producing seeds yielding an oil having an alpha-linolenic acid (ALA) content of 0.6% to 1.5%.

25. The plant of claim 12 , said plant producing seeds yielding an oil having a stearic acid content of 0.95% to 2.0%.

26. The plant of claim 1 , said plant producing seeds yielding an oil having a stearic acid content of less than 2.5% and an alpha-linolenic acid (ALA) content of less than 1.5%.

27. The plant of claim 1 , said plant producing seeds yielding an oil having an oleic acid content of at least 71% and no greater than 90%.

Assignees

• Cargill Inc

Inventors

• Coonrod Daren
• Brandt Kevin
• Zheng Honggang
• Chen Zhizheng
• Fletcher Richard

Classifications

• C11B1/10

  by extracting · CPC title

• C12N9/0071

  acting on paired donors with incorporation of molecular oxygen (1.14) · CPC title

• A01H5/10

  Seeds · CPC title

• C12N15/8247 Primary

  involving modified lipid metabolism, e.g. seed oil composition · CPC title

• C12N9/0083

  Miscellaneous (1.14.99) · CPC title