Method of purifying/concentrating sugar chains with a sugar chain-trapping molecule and method of analyzing sugar chain structure

Patent metadata

Field	Value
Publication number	US-9683006-B2
Application number	US-201414581585-A
Country	US
Kind code	B2
Filing date	Dec 23, 2014
Priority date	Dec 26, 2002
Publication date	Jun 20, 2017
Grant date	Jun 20, 2017

Abstract

The present invention provides substance which can specifically interact with sugar chains. Further, the present invention provides a method for separating, concentrating, or purifying sugar chains or a sugar chain-containing substance in a sample, comprising the steps of: a) contacting a sugar chain-trapping carrier comprising a substance which can specifically interact with sugar chains with the sample in a fluid phase under conditions that the sugar chain-trapping carrier can react with the sugar chains or sugar chain-containing substance; b) isolating a composite of the sugar chain-trapping carrier and the sugar chains or sugar chain-containing substance from the fluid phase; and c) exposing the composite to the conditions that the interaction between the sugar chain-trapping carrier and the sugar chains or sugar chain-containing substance is at least partially eliminated.

First claim

The invention claimed is:

1. A method for separating, concentrating, or purifying sugar chains or a sugar chain-containing substance in a sample, comprising the steps of:
a) contacting a sugar chain-trapping carrier comprising a substance which can specifically interact with sugar chains with the sample in a fluid phase under conditions such that the sugar chain-trapping carrier can react with the sugar chains or sugar chain-containing substance;
b) isolating a composite of the sugar chain-trapping carrier and the sugar chains or sugar chain-containing substance from the fluid phase; and
c) exposing the composite to conditions such that the interaction between the sugar chain-trapping carrier and the sugar chains or sugar chain-containing substance is at least partially eliminated, and
wherein the substance which can specifically interact with sugar chains comprises one of the following structures:

wherein:
X 1 is substituted or unsubstituted alkylene or substituted or unsubstituted alkenylene, wherein the alkylene may be optionally substituted with one or more substituents selected from oxygen and sulfur;
X 2 is oxygen or sulfur;
X 3 is oxygen or sulfur;
X 4 is methylene or ethylene;
R 1 is hydrogen or alkyl, and
R 2 and R 3 are each independently hydrogen or alkyl.

2. A method according to claim 1 , further comprising the step of liberating an aldehyde group in the sample before step a).

3. A method according to claim 2 , wherein the step of liberating the aldehyde group comprises a treatment by glycosidase or a hydrazinolysis, or both.

4. A method according to claim 1 , further comprising the step of:
d) subjecting the sample to conditions such that the sugar chain-containing substance is separated into sugar chains and a remainder.

5. An apparatus for separating, concentrating, or purifying sugar chains or a sugar chain-containing substance in a sample, comprising:
a) a sample introduction section;
b) a container having a space which can house a fluid phase; and
c) a sugar chain-trapping carrier comprising a substance which can specifically interact with sugar chains,
the container being in fluid communication with the sample introduction section, and
wherein the substance which can specifically interact with sugar chains comprises one of the following structures:

wherein:
X 1 is substituted or unsubstituted alkylene or substituted or unsubstituted alkenylene, wherein the alkylene may be optionally substituted with one or more substituents selected from oxygen and sulfur;
X 2 is oxygen or sulfur;
X 3 is oxygen or sulfur;
X 4 is methylene or ethylene;
R 1 is hydrogen or alkyl; and
R 2 and R 3 are each independently hydrogen or alkyl.

Assignees

• Sumitomo Bakelite Co

Inventors

• Nishimura Shinichiro
• Niikura Kenichi
• Nakagawa Hiroaki
• Okayama Minenobu

Classifications

• G01N2400/00

  Assays, e.g. immunoassays or enzyme assays, involving carbohydrates · CPC title

• C07K16/00

  Immunoglobulins [IG], e.g. monoclonal or polyclonal antibodies · CPC title

• C07K1/14

  Extraction; Separation; Purification · CPC title

• C07K14/77

  Ovalbumin · CPC title

• G01N2560/00

  Chemical aspects of mass spectrometric analysis of biological material · CPC title