Light-microscopy method for locating point objects

Patent metadata

Field	Value
Publication number	US-9665940-B2
Application number	US-201414778638-A
Country	US
Kind code	B2
Filing date	Mar 24, 2014
Priority date	Mar 22, 2013
Publication date	May 30, 2017
Grant date	May 30, 2017

Abstract

A light-microscopy method for locating point objects in a sample arranged in an object space includes imaging the sample onto a detector by an imaging optical unit having a depth of field of predetermined axial extent along an optical axis in the object space, onto which the detector is imaged. The point objects in the sample are located within the depth of field. The first sample image generated by the imaging of the sample onto the detector is evaluated. For locating a respective first point object in a direction of the optical axis, a parameter of a first light spot of one or more light spots of the first sample image representing the first point object is determined, and a rough axial z position related to the first point object is assigned to the parameter based on predetermined association information.

First claim

The invention claimed is:

1. A light-microscopy method for locating point objects in a sample arranged in an object space, the sample being imaged onto a detector by an imaging optical unit having a depth of field of predetermined axial extent along an optical axis in the object space, onto which the detector is imaged, wherein the point objects in the sample are located within the depth of field, wherein a first sample image generated by the imaging of the sample onto the detector is evaluated,
wherein, for locating a respective first point object in a direction of the optical axis, a parameter of a first light spot of one or more light spots of the first sample image representing the first point object is determined, and a first axial z position related to the first point object is assigned to the parameter based on predetermined association information, the method comprising:
shifting the depth of field within which the point objects are located in the object space relative to the sample along the optical axis by a predetermined axial displacement, the predetermined axial displacement being smaller than the predetermined axial extent of the depth of field;
imaging, by the imaging optical unit, the sample onto the detector with the axially shifted depth of field to generate at least a second sample image;
determining second image z positions of the point objects in the second sample image based on the predetermined axial displacement;
comparing first image z positions of the point objects in the first sample image to the second image z positions of the point objects in the second sample image; and
generating, based on the comparing the first image z positions of the point objects in the first sample image to the second image z positions of the point objects in the second sample image, correction information so as to correct the first axial z position related to the first point objects based on the predetermined association information.

2. The light-microscopy method according to claim 1 , wherein at least one z reference position, which is stationary relative to the depth of field, is defined within the depth of field along the optical axis, the method further comprising:
defining, from one or more light spots from the second sample image that represent the point objects arranged in the axially shifted depth of field in the z reference position, a reference light spot that represents a reference point object
determining the z position of the reference point object in the object space based on the axial displacement of the depth of field and the z reference position; and
identifying one of the one or more light spots from the first sample image as a comparison light spot, wherein the comparison light spot represents, in the first sample image, the reference point object,
wherein generating, based on the comparing the first image z positions of the point objects in the first sample image to the second image z positions of the point objects in the second sample image, correction information for correcting the first axial z position related to the first point object based on the predetermined association information comprises generating, based on a deviation of the z position of the reference point object as represented by the comparison light spot and the z-position of the reference point object as represented by the reference light spot, the correction information.

3. The light-microscopy method according to claim 2 , wherein the depth of field is axially shifted in several steps,
wherein in each of these steps, the correction information is generated based on the respective reference light spot and the corresponding comparison light spot, and
wherein the z positions of the point objects determined in dependence on the association function are corrected by means of the gradually generated correction information.

4. The light-microscopy method according to claim 3 , wherein the z position determined for the respective comparison light spot based on the association information is replaced in each step by the z position determined for the corresponding reference light spot, and that a correction function as correction information is generated by this replacement.

5. The light-microscopy method according to claim 4 , wherein intermediate values of the correction function, for which no comparison light spots and reference light spots are available by the gradual shift of the depth of field, are determined by interpolation.

6. The light-microscopy method according to claim 3 , wherein the z positions of the point objects determined by gradually shifting the depth of field are superimposed to a total locating image.

7. The light-microscopy method according to claim 2 , wherein a comparison structure of the comparison light spots formed by the comparison light spots is identified while considering its brightness.

8. The light-microscopy method according to claim 3 , wherein the sum of the individual axial displacements is substantially equal to the axial extent of the depth of field.

9. The light-microscopy method according to claim 1 , wherein the axial displacement is detected by a sensor.

10. The light-microscopy method according to claim 1 , wherein the depth of field in the object space is shifted relative to the sample along the optical axis by the axial displacement by shifting the sample relative to the imaging optical unit or by shifting the imaging optical unit relative to the sample along the optical axis.

11. The light-microscopy method according to claim 1 , wherein the predetermined association information is obtained by moving a calibration point object within the depth of field along the optical axis and detecting the parameter of the first light spot representing a calibration point object of a calibration image generated on the detector in dependence on a z position of the calibration point object.

12. The light-microscopy method according to claim 1 , wherein an arrangement with two detection channels is used as a detector,
wherein a first detection channel having a first image plane optically conjugated to be a first focal plane, and
wherein a second detection channel has a second image plane offset along the optical axis with regard to the first image plane, which is optically conjugated to a second focal plane offset along the optical axis with regard to the first focal plane.

13. The light-microscopy method according to claim 1 , further comprising:
using a cylindrical lens upstream of the detector, which leads to a distinguishable change in form of the light spot generated on the detector, when a point object assigned to one of the one or more light spots along the optical axis is moved from one side to another side of a focal plane lying in the depth of field.

14. The light-microscopy method according to claim 1 , wherein one of a form or an extent of the first light spot is used as the parameter.

15. A light-microscopy device for locating point objects in a sample, the light-microscopy device comprising
an imaging optical unit having a depth of field of a predetermined axial extent along its optical axis in an object space;
a detector, onto which the imaging optical unit can image a sample arranged in the object space; and
a control unit operable to locates one or more point objects contained in the sample within the depth of field, the control unit being operable to evaluate a first sample image that the imaging optical unit generates on the detector;
wherein the control unit is operable to determine a parameter of a first light spot of the first sample image, the first light spot repres

Assignees

• Leica Microsystems

Inventors

• Foelling Jonas

Classifications

• G02B27/58

  Optics for apodization or superresolution; Optical synthetic aperture systems · CPC title

• G02B21/367

  providing an output produced by processing a plurality of individual source images, e.g. image tiling, montage, composite images, depth sectioning, image comparison · CPC title

• G02B27/0075

  with means for altering, e.g. increasing, the depth of field or depth of focus · CPC title

• G06T2207/30004

  Biomedical image processing · CPC title

• G02B3/06

  with cylindrical or toric faces · CPC title