Mass analysis data analyzing method and apparatus

Patent metadata

Field	Value
Publication number	US-9638629-B2
Application number	US-201114236497-A
Country	US
Kind code	B2
Filing date	Aug 3, 2011
Priority date	Aug 3, 2011
Publication date	May 2, 2017
Grant date	May 2, 2017

Abstract

A method and apparatus for estimating the structure of an unidentified substance produced from an original substance having a known structural formula through partial structural change caused by metabolism or the like. A mass difference between a product ion, originating from the unidentified substance and having a partial structure including a structural change site, and a product ion, originating from the original substance and having a partial structure prior to the structural change, is equal to the mass difference between the original substance and the unidentified substance. Therefore, when pairs of product ions each having such a mass difference are selected to be compared with partial structures obtained from the known structural formula of the original substance, a minimum common partial structure having the structural change site is obtained.

First claim

The invention claimed is:

1. A mass analysis method for estimating a structure of an unidentified substance having a partially different structure from a structurally known substance based on mass analysis data about the structurally known substance and mass analysis data about fragments obtained by one or more dissociation operations for the structurally known substance, the mass analysis data analyzing method comprising:
performing one or more dissociation operations for the unidentified substance by using a mass analyzer to obtain mass analysis data about the unidentified substance and mass analysis data about fragments;
determining a candidate a structural difference between the structurally known substance and the unidentified substance based on a mass difference between the structurally known substance and the unidentified substance obtained from the mass analysis data about both of the substances;
selecting a plurality of pairs each composed of a mass of a fragment originating from the structurally known substance and a mass of a fragment originating from the unidentified substance, where, in each of the pairs, a mass difference between the mass of the fragment obtained from the mass analysis data about the fragment originating from the structurally known substance and the mass of the fragment obtained from the mass analysis data about the fragment originating from the unidentified substance is equal to the mass difference corresponding to the candidate structural difference;
determining a minimum common partial structure by using information about partial structures presumed from the masses of the fragments originating from the structurally known substance paired with the fragments originating from the unidentified substance in the selected pairs on an assumption that the fragments originating from the unidentified substance included in the plurality of selected pairs correspond to partial structures different from one another; and
estimating a candidate of the structure of the unidentified substance based on the determined minimum common partial structure, a known structure of the structurally known substance and the candidate structural difference,
outputting the candidate of the structure of the unidentified substance, whereby identifying the unidentified substance on which the one or more dissociation operations are performed by the mass analyzer is improved by determining the minimum common partial structure.

2. The mass analysis method according to claim 1 , wherein the fragments are product ions, or both product ions and neutral losses.

3. The mass analysis method according to claim 2 , wherein it is determined whether or not a combination of masses of a selected pair is present in the mass analysis data about the fragments originating from the structurally known substance, and when a selected pair is present, the selected pair is taken as having low reliability in estimating the structure of the unidentified substance.

4. The mass analysis method according to claim 2 ,
wherein when the pairs each composed of a mass of a fragment originating from the structurally known substance and a mass of a fragment originating from the unidentified substance is unable to be selected, where, in each of the selected pairs, a mass difference between the mass of the fragment obtained from the mass analysis data about the fragment originating from the structurally known substance and the mass of the fragment obtained from the mass analysis data about the fragment originating from the unidentified substance is equal to the mass difference derived from the candidate structural difference, the candidate structural difference between the structurally known substance and the unidentified substance is changed to estimate the structure of the unidentified substance again.

5. The mass analysis method according to claim 2 ,
wherein on the assumption that the structural difference between the structurally known substance and the unidentified substance is caused in one position, the candidate structural difference is determined based on the mass difference between the structurally known substance and the unidentified substance obtained from the mass analysis data of the structurally known substance and the unidentified substance, and
when the pairs each composed of a mass of a fragment originating from the structurally known substance and a mass of a fragment originating from the unidentified substance is unable to be selected, where, in each of the selected pairs, a mass difference between the mass of the fragment obtained from the mass analysis data about the fragment originating from the structurally known substance and the mass of the fragment obtained from the mass analysis data about the fragment originating from the unidentified substance is equal to the mass difference derived from the candidate structural difference, it is estimated that the structural difference between the structurally known substance and the unidentified substance is caused in a plurality of positions.

6. A mass analysis apparatus for estimating a structure of an unidentified substance having a partially different structure from a structurally known substance, comprising:
a mass analyzer that obtains mass analysis data about the unidentified substance and mass analysis data about fragments obtained by one or more dissociation operations for the unidentified substance;
a data processing section, including
a) a partial structure information storage unit for storing a mass of each fragment obtained from mass analysis data about the fragments originating from the structurally known substance obtained by one or more dissociation operations for the structurally known substance and a partial structure obtained from a known structure of the structurally known substance, the mass and the partial structure being associated with each other;
b) a structural difference candidate information setting unit for setting information about a candidate structural difference between the structurally known substance and the unidentified substance, the candidate structural difference being determined based on a mass difference between the structurally known substance and the unidentified substance obtained from the mass analysis data about both of the substances;
c) a fragment pair selection unit for selecting a plurality of pairs each composed of a mass of a fragment originating from the structurally known substance and a mass of a fragment originating from the unidentified substance, where, in each of the pairs, a mass difference between the mass of the fragment obtained from the mass analysis data about the fragment originating from the structurally known substance and the mass of the fragment obtained from the mass analysis data about the fragment originating from the unidentified substance is equal to the mass difference derived from the candidate structural difference set by the structural difference candidate information setting unit; and
d) a structural estimation unit for determining a minimum common partial structure by referring to information in the partial structure information storage unit about partial structures associated with masses of the fragments originating from the structurally known substance paired with the fragments originating from the unidentified substance in the selected pairs on an assumption that the fragments originating from the unidentified substance included in the plurality of selected pairs correspond to partial structures different from one another, and estimating a candidate for the structure of the unidentified substance based on the determined minimum common partial structure, the known structure of the structurally known substance and the candidate structural difference; and

an output device that outputs the candi

Assignees

• Yamaguchi Shinichi
• Shimadzu Corp

Inventors

• Yamaguchi Shinichi

Classifications

• H01J49/0036 Primary

  Step by step routines describing the handling of the data generated during a measurement · CPC title

• H01J49/0045

  characterised by the fragmentation or other specific reaction · CPC title

• G16C20/20

  Identification of molecular entities, parts thereof or of chemical compositions · CPC title

• G01N21/31 Primary

  Investigating relative effect of material at wavelengths characteristic of specific elements or molecules, e.g. atomic absorption spectrometry {(G01N21/72 takes precedence)} · CPC title

• G06F19/703

  Physics · mapped topic