Bio-imaging method

Patent metadata

Field	Value
Publication number	US-9576181-B2
Application number	US-201314441471-A
Country	US
Kind code	B2
Filing date	Nov 7, 2013
Priority date	Nov 7, 2012
Publication date	Feb 21, 2017
Grant date	Feb 21, 2017

Abstract

A method for defining an isolation area around an object of interest in a cell culture vessel, the method comprising the steps of: —obtaining one or more images of the cell culture vessel using one or more of a plurality of illumination sources, each illumination source being capable of illuminating the vessel from a different direction; —selecting an image or combination of images for further processing; —applying a circular object detection transformation to identify one or more objects of interest being substantially circular objects in the cell culture vessel, which circular objects of interest are representative of isolated colonies in the cell culture vessel and determining the center of an object of interest; —applying a binarizing step to obtain a binarized image of the object of interest and other objects, wherein the center of the binarized image corresponds to the center of the object of interest; —iteratively forming concentric circles with increasing radius, wherein the concentric circles are centered on the center of the binarized image; —identifying coronas, wherein a corona is delimited by two circles having successive radius values; —for each corona: determining the presence and the location of any other object located in the corona to determine the presence and the location of other objects; —determining a clearance angle defining an angular sector free of other objects around the object of interest to define the isolation area around the object of interest.

First claim

The invention claimed is:

1. A method for defining an isolation area around an object of interest in a cell culture vessel, the method comprising:
obtaining one or more images of the cell culture vessel using one or more of a plurality of illumination sources, each illumination source being capable of illuminating the vessel from a different direction;
selecting an image or combination of images for further processing;
applying a circular object detection transformation to identify one or more objects of interest being substantially circular objects in the cell culture vessel, the one or more objects of interest being representative of isolated colonies in the cell culture vessel and determining a center of an object of interest;
applying a binarizing step to obtain a binarized image of the object of interest and other objects, wherein a center of the binarized image corresponds to the center of the object of interest;
iteratively forming concentric circles with increasing radius, wherein the concentric circles are centered on the center of the binarized image;
identifying coronas, wherein a corona is delimited by two circles having successive radius values; and
for each corona:
determining a presence and a location of other objects located in the corona to determine the presence and the location of the other objects, and
determining a clearance angle defining an angular sector free of the other objects around the object of interest to define an isolation area around the object of interest and to define the availability of the object of interest to be picked.

2. The method of claim 1 , further comprising providing a picking profile of the object of interest, wherein the picking profile comprises values related to each corona and a corresponding clearance angle.

3. The method of claim 2 , further comprising using the picking profile in association with a lookup table for a picking process to determine an availability of a picking process for a colony relating to specific criteria of the lookup table.

4. The method of claim 1 , wherein the value of said clearance angle is directly proportional to the number of other objects detected within the corona.

Assignees

• Biomerieux Sa
• Commissariat Á L'Energie Atomique Et Aux Energies Alternatives
• Biomerieux Sa
• Commissariat Energie Atomique

Inventors

• Allano Loréne
• Sutra Guillaume
• Munoz Lorette
• Fulchiron Corine
• Decaux Dominique
• Pinston Frédéric

Classifications

• G06T7/0012 Primary

  Biomedical image inspection · CPC title

• G06T2207/10024

  Color image · CPC title

• G06T2207/10056

  Microscopic image · CPC title

• G06T2207/30024

  Cell structures in vitro; Tissue sections in vitro · CPC title

• G06T5/005

  Physics · mapped topic