Optical alignment tool

Patent metadata

Field	Value
Publication number	US-9540690-B2
Application number	US-201414906536-A
Country	US
Kind code	B2
Filing date	Aug 28, 2014
Priority date	Aug 28, 2013
Publication date	Jan 10, 2017
Grant date	Jan 10, 2017

Abstract

Provided is an inspection apparatus including: (a) a translucent or transparent plate having a bottom surface, at least a portion of the bottom surface having an opaque material printed thereon in a pattern having at least one transparent or translucent portion; and (b) a chamber disposed below the bottom surface, whereby light emitted from the chamber or through the chamber can pass through the at least one transparent or translucent portion.

First claim

What is claimed is:

1. An inspection apparatus comprising:
(a) a translucent or transparent plate having a bottom surface, at least a portion of the bottom surface having an opaque material printed thereon in a pattern having at least one transparent or translucent portion, wherein the pattern comprises a plurality of translucent or transparent holes in an ordered array;
(b) a channel disposed below the bottom surface, wherein the channel comprises a plurality of parallel lanes that are connected to form a single chamber, whereby light emitted from the channel or through the channel can pass through the at least one transparent or translucent portion.

2. The apparatus of claim 1 , further comprising:
(c) a fluid filling at least a portion of the channel, the fluid comprising at least one light emitting material.

3. The apparatus of claim 1 , further comprising a second plate in contact with the translucent or transparent plate, wherein the channel opening is disposed between the translucent or transparent plate and the second plate.

4. The apparatus of claim 1 , wherein the pattern comprises at least one translucent or transparent feature forming a fiducial element.

5. The apparatus of claim 1 , wherein the bottom surface comprises at least one patterned tile comprising the opaque material.

6. The apparatus of claim 5 , wherein the bottom surface further comprises at least one transparent tile that lacks the opaque material.

7. The apparatus of claim 5 , wherein the opaque material comprises a plurality of transparent or translucent holes having an area less than 75 square microns.

8. The apparatus of claim 7 , wherein the opaque material comprises a plurality of transparent or translucent holes that are separated by at least 10 microns.

9. The apparatus of claim 5 , wherein the tiles are arranged in a unit on the bottom surface and the unit is repeated six times to form a pattern on the bottom surface.

10. The apparatus of claim 1 , wherein the plurality of parallel lanes include detection lanes that are relatively wide compared to an ingress lane and an egress lane that are relatively narrow.

11. An optical detection device, comprising
(a) an inspection apparatus of claim 1 , and
(b) one or more detectors disposed above the plate to receive the light that is emitted from the channel or through the channel.

12. The optical device of claim 11 , wherein the one or more detectors comprise a plurality of microfluorometers.

13. The optical device of claim 12 , wherein the one or more detectors comprise six microfluorometers, and wherein the inspection apparatus comprises four lanes,
wherein the bottom surface of the inspection apparatus comprises at least one patterned tile comprising the opaque material, and wherein the six microfluorometers are positioned to detect at least one of the patterned tiles,
wherein the at least one patterned tile is entirely coated by the opaque material,
wherein the opaque material comprises a plurality of transparent or translucent holes having an area less than 75 square microns, and
wherein the transparent or translucent holes are separated by at least 10 microns.

14. A method of evaluating an imaging module comprising:
(a) positioning an imaging module in optical alignment with the inspection apparatus of claim 1 ; and
(b) detecting light transmitted through one or more of the transparent or translucent portions.

15. The method of claim 14 , further comprising (c) determining accuracy of the optical alignment based on the light that is detected.

16. The method of claim 14 , further comprising (c) determining autofocus accuracy of a detector that detects the light that is detected.

17. The method of claim 14 , further comprising (c) finding a fiducial on the inspection apparatus based on the light that is detected.

18. The method of claim 14 , further comprising (c) setting excitation source currents based on the light that is detected when using the excitation source to irradiate the inspection apparatus.

19. The method of claim 14 , further comprising (c) calibrating an excitation source based on the light that is detected when using the excitation source to irradiate the inspection apparatus.

20. The method of claim 14 , further comprising (c) calibrating a detector that detects the light that is detected.

21. The method of claim 14 , further comprising (c) determining an image uniformity correction or flat field correction based on the light that is detected.

22. The method of claim 14 , further comprising (c) determining z bias in an excitation source based on the light that is detected when using the excitation source to irradiate the inspection apparatus.

23. The method of claim 14 , further comprising (c) determining camera-to-camera xy offset based on the light that is detected.

24. The method of claim 14 , further comprising (c) determining repeatability of xy stage positioning or hysteresis in xy stage positioning based on the light that is detected.

25. The method of claim 14 , further comprising (c) determining focus repeatability based on the light that is detected.

Assignees

• Illumina Inc

Inventors

• Earney John
• Watson Dakota
• Pinto Joseph

Classifications

• G01N21/6458

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• G01N21/278

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• G01N2021/6482

  Sample cells, cuvettes · CPC title

• G01N2021/6439

  with indicators, stains, dyes, tags, labels, marks · CPC title

• G01N2021/058

  Flat flow cell · CPC title