Compositions and methods for accurately identifying mutations
US-2024409996-A1 · Dec 12, 2024 · US
US9512480B2 · US · B2
| Field | Value |
|---|---|
| Publication number | US-9512480-B2 |
| Application number | US-201313895308-A |
| Country | US |
| Kind code | B2 |
| Filing date | May 15, 2013 |
| Priority date | Nov 5, 2009 |
| Publication date | Dec 6, 2016 |
| Grant date | Dec 6, 2016 |
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Systems, methods, and apparatus for determining at least a portion of fetal genome are provided. DNA fragments from a maternal sample (maternal and fetal DNA) can be analyzed to identify alleles at certain loci. The amounts of DNA fragments of the respective alleles at these loci can be analyzed together to determine relative amounts of the haplotypes for these loci and determine which haplotypes have been inherited from the parental genomes. Loci where the parents are a specific combination of homozygous and heterozygous can be analyzed to determine regions of the fetal genome. Reference haplotypes common in the population can be used along with the analysis of the DNA fragments of the maternal sample to determine the maternal and paternal genomes. Determination of mutations, a fractional fetal DNA concentration in a maternal sample, and a proportion of coverage of a sequencing of the maternal sample can also be provided.
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What is claimed is: 1. A method of determining a first proportion of a fetal genome that has been sequenced from a biological sample obtained from a pregnant female, the fetus having a father and a mother being the pregnant female, the father having a paternal genome and the mother having a maternal genome, wherein the sample contains a mixture of maternal and fetal nucleic acids, the method comprising: receiving sequencing results of a sequencing of a plurality of nucleic acid mo…
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