Method of preparing a reaction mixture and related products

Patent metadata

Field	Value
Publication number	US-9416417-B2
Application number	US-201414195088-A
Country	US
Kind code	B2
Filing date	Mar 3, 2014
Priority date	Oct 2, 2009
Publication date	Aug 16, 2016
Grant date	Aug 16, 2016

Abstract

The invention relates to a method of preparing a reaction mixture for Polymerase Chain Reaction (PCR) assay and a solution set for PCR. The method comprises providing a sample solution comprising a biological sample to be amplified in said PCR assay and first colorant providing the solution a first color, providing a reagent solution comprising at least one other substance required for performing said assay and second colorant providing the solution a second color different from the first color, and mixing the sample solution and the first reagent solution for providing a mixed solution to be subjected to the PCR process, the mixed solution having, due to said first and second colorants, a third color different from the first and second colors. The invention significantly aids in pipetting PCR assays.

First claim

The invention claimed is:

1. A solution set for a polymerase chain reaction (PCR) assay, the solution set comprising
a first reagent solution comprising
a first colorant having a first color distinguishable in the visible spectrum, and
a sample solution containing a template to be amplified, and

a second reagent solution comprising
a second colorant having a second color distinguishable in the visible spectrum, the second color different from the first color, and
at least one substance selected from the group consisting of a polymerase, a primer, a plurality of dNTPs, a fluorescent qPCR dye, and a probe,
at least the first and second reagent solutions on mixing forming a mixed solution, the mixed solution having, due to the first and second colorants, a third color different from the first and second colors and distinguishable in the visible spectrum.

2. The solution set of claim 1 where the first reagent solution is a dilution buffer.

3. The solution set of claim 1 where the second reagent solution is a PCR master mix or a qPCR master mix.

4. The solution set of claim 1 where at least one of the first or second colorants is a dye.

5. The solution set of claim 1 where the second reagent solution is a PCR master mix or a qPCR master mix and the first reagent solution is a dilution buffer.

6. The solution set of claim 5 where the first color is blue, the second color is yellow, and the mixed solution color is green.

7. A solution set for a polymerase chain reaction (PCR) assay, the solution set comprising
a first reagent solution comprising
a first colorant having a first color distinguishable in the visible spectrum, and
a PCR master mix or a qPCR master mix, and

a second reagent solution comprising
a second colorant having a second color distinguishable in the visible spectrum, the second color different from the first color, and
a sample solution containing a template to be amplified, the first and second reagent solutions on mixing forming a mixed solution having, due to the first and second colorants, a third color distinguishable in the visible spectrum and different from the first and second colors.

8. The solution set of claim 7 where the sample solution is a dilution buffer.

9. A kit comprising the solution set of claim 1 and instructions for performing the PCR assay.

10. A kit comprising the solution set of claim 7 and instructions for performing the PCR assay.

11. The solution set of claim 1 where the at least one the first or second colorants is selected from the group consisting of Quinoline yellow, Xylene cyanol, Brilliant Blue, Patent Blue, Indigocarmine, Acid Red 1, m-Cresol Purple, Cresol Red, Neutral Red, Bromocresol Green, Acid Violet 5, Bromo phenol blue, and Orange G.

12. The solution set of claim 1 where the concentration of the colorant in each of the first reagent solution and the second reagent solution results in an absorbance of 0.001-0.5 at a maximum absorption wavelength of the reagent solution with a 1 mm light path when diluted to a desired PCR processing concentration.

13. The solution set of claim 12 where the absorbance is 0.01-0.5.

14. The solution set of claim 12 where the absorbance is 0.03-0.15.

15. The solution set of claim 1 where at least one of the first or second reagent solutions is a concentrate.

16. The solution set of claim 1 where the first reagent solution and the second reagent solution form a transparent or translucent mixed solution suitable for qPCR.

17. The solution set of claim 1 where the mixed solution comprises a fluorescent agent, and where an absorbance peak of any colorant does not overlap with an emission or excitation wavelength of the fluorescent agent.

18. The solution set of claim 1 where the mixed solution comprises a fluorescent agent and a total absorbance of the mixed solution at the emission or excitation wavelength of the fluorescent agent is less than 0.05 with a 1 mm light path.

19. The solution set of claim 18 where the total absorbance of the mixed solution at the emission or excitation wavelength of the fluorescent agent is less than 0.03.

20. The solution set of claim 18 where the total absorbance of the mixed solution at the emission or excitation wavelength of the fluorescent agent is less than 0.01.

21. The solution set of claim 1 where the fluorescent qPCR dye comprises a passive reference dye.

22. The solution set of claim 21 where the passive reference dye is ROX.

23. The solution set of claim 7 where the PCR master mix or the qPCR master mix further comprises a passive reference dye.

24. The solution set of claim 23 where the passive reference dye is ROX.

Assignees

• Kurkela Jaakko
• Eklin Katja
• Uusivirta Sanna
• Thermo Fisher Scientific Baltics Uab

Inventors

• Kurkela Jaakko
• Eklin Katja
• Uusivirta Sanna

Classifications

• G01N21/29

  using visual detection (G01N21/31 takes precedence) · CPC title

• G01N2021/6439

  with indicators, stains, dyes, tags, labels, marks · CPC title

• G01N21/251

  Colorimeters; Construction thereof · CPC title

• G01N21/6428

  Measuring fluorescence of fluorescent products of reactions or of fluorochrome labelled reactive substances, e.g. measuring quenching effects, using measuring "optrodes" (in vivo A61B5/00; immunoassay G01N33/53) · CPC title

• C12Q1/6876 Primary

  Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes · CPC title