Production of polyunsaturated fatty acids by coexpression of acyl-CoA:lysophosphatidylcholine acyltransferases and phospholipid:diacylglycerol acyltransferases

Patent metadata

Field	Value
Publication number	US-9416382-B2
Application number	US-201313916628-A
Country	US
Kind code	B2
Filing date	Jun 13, 2013
Priority date	Jun 19, 2012
Publication date	Aug 16, 2016
Grant date	Aug 16, 2016

Abstract

Acyl-CoA:lysophosphatidylcholine acyltransferase [“LPCAT”] having the ability to convert acyl-CoA+1-acyl-sn-glycero-3-phosphocholine to CoA+1,2-diacyl-sn-glycero-3-phosphocholine (EC 2.3.1.23) is disclosed herein to be over-expressed along with the over-expression of phospholipid:diacylglycerol acyltransferase [“PDAT”] having the ability to transfer a fatty acyl group from the sn-2 position of a phospholipid (e.g., phosphatidylcholine) to the sn-3 position of 1,2-diacylglycerol [E.C.2.3.1.158], thus resulting in a lysophospholipid and TAG. Co-expression of these enzymes in a recombinant microbial host cell resulted in increased production of long chain polyunsaturated fatty acids [“PUFAs”].

First claim

What is claimed is:

1. A recombinant microbial cell for the production of at least one long-chain polyunsaturated fatty acid, said recombinant microbial cell comprising:
(a) at least one polypeptide having acyl CoA:lysophosphatidylcholine acyltransferase (LPCAT) activity, wherein the polypeptide having LPCAT activity has at least 95% amino acid sequence identity with the polypeptide of SEQ ID NO: 4 (YILPCAT), based on the Clustal W method of alignment, and wherein the polypeptide having LPCAT activity is a polypeptide comprising at least one mutant membrane-bound O-acyltransferase protein family motif comprising the amino acid sequence set forth in SEQ ID NO: 39, wherein the amino acid residue at position 2 of SEQ ID NO: 39 is C, the amino acid residue at position 3 of SEQ ID NO: 39 is selected from the group consisting of A, C and G, the amino acid residue at position 6 of SEQ ID NO: 39 is selected from the group consisting of H, G, N, and Y, the amino acid residue at position 7 of SEQ ID NO: 39 is selected from the group consisting of A, N, G, H and M, the amino acid residue at position 16 of SEQ ID NO: 39 is selected from the group consisting of Q, N, and H, and the amino acid residue at position 17 of SEQ ID NO: 39 is selected from the group consisting of A, V and N;
(b) at least one polypeptide having phospholipid:diacylglycerol acyltransferase (PDAT) activity, wherein the polypeptide having PDAT activity has at least 95% amino acid sequence identity with the polypeptide of SEQ ID NO: 32 (YIPDAT), based on the Clustal W method of alignment; and
(c) a polyunsaturated fatty acid biosynthetic pathway capable of producing at least one long chain polyunsaturated fatty acid;

wherein said polypeptides of (a) and (b) are expressed, and wherein the recombinant microbial cell comprises an increased amount of a polyunsaturated fatty acid measured as a weight percent of total fatty acids, when compared to a control cell, wherein the control cell is the recombinant microbial cell wherein said polypeptides of (a) and (b) are not expressed.

2. The recombinant microbial cell of claim 1 , wherein the recombinant microbial cell further comprises at least one of the following, when compared to the control cell:
(i) an increased C 18 to C 20 elongation conversion efficiency, or
(ii) an increased amount of total fatty acids measured as a weight percent of dry cell weight.

3. The recombinant microbial cell of claim 2 , wherein the increased C 18 to C 20 elongation conversion efficiency is an effect of increased delta-9 elongase conversion efficiency or increased delta-6 elongase conversion efficiency.

4. The recombinant microbial cell of claim 1 , wherein the long-chain polyunsaturated fatty acid is selected from the group consisting of: eicosadienoic acid, dihomo-gamma-linolenic acid, arachidonic acid, docosatetraenoic acid, omega-6 docosapentaenoic acid, eicosatrienoic acid, eicosatetraenoic acid, eicosapentaenoic acid, omega-3 docosapentaenoic acid and docosahexaenoic acid.

5. The recombinant microbial cell of claim 1 , wherein the microbial cell is selected from the group consisting of: algae, yeast, euglenoids, stramenopiles, oomycetes and fungi.

6. The recombinant microbial cell of claim 5 , wherein the cell is an oleaginous yeast.

7. The recombinant microbial cell of claim 6 , wherein the oleaginous yeast is of the genus Yarrowia.

8. The recombinant microbial cell of claim 1 , wherein the polypeptide having LPCAT activity comprises an amino acid sequence that (i) is at least 97% identical to SEQ ID NO: 4, and (ii) comprises substitutions at residues corresponding to residues 136 and 389 of SEQ ID NO: 4.

9. The recombinant microbial cell of claim 8 , wherein said residue corresponding to residue 136 is substituted with a serine or valine, and said residue corresponding to residue 389 is substituted with an alanine, cysteine, or serine.

10. A method for producing at least one polyunsaturated fatty acid comprising:
(a) growing the recombinant microbial cell of claim 1 in the presence of a fermentable carbon source; and
(b) optionally recovering the long-chain polyunsaturated fatty acid.

11. The method of claim 10 , wherein the recombinant microbial cell is an oleaginous yeast and the long-chain polyunsaturated fatty acid is selected from the group consisting of: eicosadienoic acid, dihomo-gamma-linolenic acid, arachidonic acid, docosatetraenoic acid, omega-6 docosapentaenoic acid, eicosatrienoic acid, eicosatetraenoic acid, eicosapentaenoic acid, omega-3 docosapentaenoic acid and docosahexaenoic acid.

12. The method of claim 11 , wherein the oleaginous yeast is of the genus Yarrowia.

Assignees

• Du Pont

Inventors

• Bostick Michael W
• Yadav Narendra S
• Zhang Hongxiang
• Zhu Quinn Qun

Classifications

• C12N15/815

  for yeasts other than Saccharomyces · CPC title

• Y02P20/52

  using catalysts, e.g. selective catalysts · CPC title

• C12N9/1029

  transferring groups other than amino-acyl groups (2.3.1) · CPC title

• C12P7/6427 Primary

  Polyunsaturated fatty acids [PUFA], i.e. having two or more double bonds in their backbone · CPC title

• C12P7/6432 Primary

  Eicosapentaenoic acids [EPA] · CPC title