Multivalent heteromultimer scaffold design and constructs

Patent metadata

Field	Value
Publication number	US-9388231-B2
Application number	US-201313941450-A
Country	US
Kind code	B2
Filing date	Jul 13, 2013
Priority date	Jul 13, 2012
Publication date	Jul 12, 2016
Grant date	Jul 12, 2016

Abstract

Provided herein are multifunctional heteromultimer proteins. In specific embodiments is a heteromultimer comprising: at least two polypeptide constructs, each polypeptide construct comprising at least one cargo polypeptide attached to a transporter polypeptide, said transporter polypeptides derived from a monomeric native protein such that said monomeric constructs associate to form the heteromultimer and said transporter polypeptides associate to form a quasi-native structure of the monomeric native protein or analog thereof. These therapeutically novel molecules encompass heteromultimers comprising constructs that function as scaffolds for the conjugation or fusion of therapeutic molecular entities (cargo polypeptides) resulting in the creation of bispecific or multivalent molecular species. Provided herein is a method for creation of bispecific or multivalent molecular species.

First claim

What is claimed is:

1. A heteromultimer comprising:
a first polypeptide construct that comprises (i) a first transporter polypeptide; and
a second polypeptide construct that comprises (ii) a second transporter polypeptide;
wherein each of said first and second transporter polypeptide comprises an amino acid sequence comprising a segment of an albumin polypeptide selected from native human serum albumin polypeptide and human alloalbumin polypeptide;
wherein said first and second transporter polypeptides are obtained by segmentation of said albumin polypeptide at a segmentation site, such that the segmentation results in a deletion of zero to 3 amino acid residues at the segmentation site;
wherein said first transporter polypeptide comprises at least one mutation selected from A194C, L198C, W214C, A217C, L331C and A335C, and said second transporter polypeptide comprises at least one mutation selected from L331C, A335C, V343C, L346C, A350C, V455C, and N458C; and
wherein said transporter polypeptides self-assemble to form a quasi-native structure of the monomeric form of the albumin polypeptide.

2. The heteromultimer of claim 1 , wherein a) the segmentation site resides on a loop of the albumin polypeptide that has a high solvent accessible surface area (SASA) and limited contact with the rest of the albumin structure, b) the segmentation results in a complementary interface between the transporter polypeptides.

3. The heteromultimer of claim 1 , wherein at least one of the first and second transporter polypeptides further comprises a linker.

4. The heteromultimer of claim 3 , wherein the linker is a GGGGS linker comprising a sequence of SEQ ID No: 179.

5. The heteromultimer of claim 1 , wherein at least one disulphide bond is formed across residues from the first and second transporter polypeptide and the disulphide bond is also observed in said albumin polypeptide.

6. A heteromultimer comprising:
a first polypeptide construct that comprises (i) a first transporter polypeptide; and
a second polypeptide construct that comprises (ii) a second transporter polypeptide;
wherein each of said first and second transporter polypeptide comprises an amino acid sequence comprising a segment of an albumin polypeptide selected from native human serum albumin polypeptide and human alloalbumin polypeptide; and
wherein said first and second transporter polypeptides are obtained by segmentation of said albumin polypeptide at a segmentation site, and
wherein said first transporter polypeptide comprises at least one mutation selected from A194C, L198C, W214C, A217C, L331C and A335C, and said second transporter polypeptide comprises at least one mutation selected from L331C, A335C, V343C, L346C, A350C, V455C, and N458C; such that said transporter polypeptides self-assemble to form a quasi-native structure of the monomeric form of the albumin polypeptide.

7. The heteromultimer of claim 6 , wherein the segmentation site a) resides on a loop of the albumin polypeptide that has a high solvent accessible surface area (SASA) and limited contact with the rest of the albumin structure, and b) results in a complementary interface between the transporter polypeptides.

8. The heteromultimer of claim 6 , wherein at least one of the first and second transporter polypeptides further comprises a linker.

9. The heteromultimer of claim 8 , wherein the linker is a GGGGS linker comprising a sequence of SEQ ID No: 179.

10. The heteromultimer of claim 1 , wherein said first polypeptide construct further comprises at least one first cargo polypeptide.

11. The heteromultimer of claim 10 , wherein the first polypeptide construct comprises two first cargo polypeptides.

12. The heteromultimer of claim 10 , wherein the at least one first cargo polypeptide is an antibody.

13. The heteromultimer of claim 12 , wherein the antibody binds CD3, CD 19, CD20, HER2, or HER3.

14. The heteromultimer of claim 10 , wherein said second polypeptide construct further comprises at least one second cargo polypeptide.

15. The heteromultimer of claim 14 , wherein the second polypeptide construct comprises two second cargo polypeptides.

16. The heteromultimer of claim 14 , wherein the at least one second cargo polypeptide is an antibody.

17. The heteromultimer of claim 16 , wherein said at least one second cargo polypeptide is selected from an antibody that binds CD3, CD19, CD20, HER2, or HER3.

18. The heteromultimer of claim 1 , wherein said first polypeptide construct further comprises at least one first cargo polypeptide, and said second polypeptide construct further comprises at least one second cargo polypeptide.

19. The heteromultimer of claim 18 , wherein said first cargo polypeptide is an antibody that binds CD3 and said second cargo polypeptide is an antibody that binds to CD19 or CD20.

20. The heteromultimer of claim 18 , wherein said first cargo polypeptide is an antibody that binds HER2 and said second cargo polypeptide is an antibody that binds HER3.

21. The heteromultimer of claim 10 , wherein said at least one first cargo polypeptide is fused to said first transporter polypeptide with a linker.

22. The heteromultimer of claim 14 , wherein said at least one second cargo polypeptide is fused to said second transporter polypeptide with a linker.

23. The heteromultimer according to claim 11 , wherein the two first cargo polypeptides are different from each other.

24. The heteromultimer according to claim 15 , wherein the two second cargo polypeptides are different from each other.

25. The heteromultimer of claim 1 , wherein said heteromultimer binds to FcRn.

26. The heteromultimer according to claim 1 , wherein the transporter polypeptides are derived from the same type of albumin polypeptide.

27. The heteromultimer according to claim 1 , wherein the transporter polypeptides are derived from different types of albumin polypeptides.

28. The heteromultimer of claim 1 , wherein the first polypeptide construct further comprises at least one first cargo polypeptide that is an antibody, and the second polypeptide construct further comprises at least one second cargo polypeptide that is a toxin moiety.

29. The heteromultimer of claim 1 , wherein the first polypeptide construct further comprises at least one first cargo polypeptide that binds a target antigen, and wherein said target antigen is at least one of a-chain (CD25) of IL-2R, Amyloid beta, EpCAM, CD3, CD16, CD20, CD22, CD23, CD3, CD4, CD52, CD80, CTLA-4, EGFR, F protein of RSV, G250, glycoprotein IIB/IIIa R, HER2, HER3, IGF1R, HSP90, IgE antibody, IL-12, IL-23, IL-1b, IL-5, IL-6, RANKL, TNF alpha, TNFR, TRAIL,VEGF-A, glucagon receptor, GLP receptor, and LDL receptor.

30. The heteromultimer of claim 1 wherein at least one cargo polypeptide is an enzyme, hormone, therapeutic polypeptide, antigen, chemotoxin, radiotoxin, or cytokine.

31. The heteromultimer of claim 1 , wherein said albumin polypeptide is native human serum albumin polypeptide.

32. A host cell comprising nucleic acid encoding the heteromultimer of claim 1 .

33. A pharmaceutical composition comprising the heteromultimer of claim 10 and an adjuvant.

34. The heteromultimer of claim 10 , wherein the activity of the cargo polypeptide is altered on fusion to the transporter polypept

Assignees

• Zymeworks Inc

Inventors

• Dixit Surjit Bhimarao
• D Angelo Igor Edmondo Paolo
• Sanches Mario
• Ng Gordon Yiu Kon

Classifications

• A61P35/00

  Antineoplastic agents · CPC title

• C07K16/40

  against enzymes · CPC title

• C07K16/2809

  against the T-cell receptor (TcR)-CD3 complex · CPC title

• C07K16/283

  against Fc-receptors, e.g. CD16, CD32, CD64 (CD23 C07K16/2851) · CPC title

• C07K16/00

  Immunoglobulins [IG], e.g. monoclonal or polyclonal antibodies · CPC title