Compositions and methods for diagnosing and/or treating influenza infection

Patent metadata

Field	Value
Publication number	US-9278998-B2
Application number	US-82993110-A
Country	US
Kind code	B2
Filing date	Jul 2, 2010
Priority date	Jul 2, 2009
Publication date	Mar 8, 2016
Grant date	Mar 8, 2016

Abstract

The present invention provides HA polypeptides (e.g., H1 HA polypeptides) that bind to umbrella-topology glycans, and reagents and methods relating thereto. The present invention provides binding agents that bind to HA polypeptides (e.g., H1 HA polypeptides), and reagents and methods relating thereto. The present invention provides interfering agents that inhibit the binding of HA polypeptides (e.g., H1 HA polypeptides) to HA receptors, and reagents and methods relating thereto. The present invention provides compositions and methods for treating, preventing, and/or diagnosing influenza infection utilizing HA polypeptides, HA polypeptide binding agents, HA polypeptide interfering agents, and/or vaccine compositions comprising any of the foregoing.

First claim

We claim:

1. An H1 HA influenza hemagglutinin (“HA”) polypeptide variant whose amino acid sequence:
i) shows at least 90% identity with a reference wild type H1 HA polypeptide that is the HA from A/California/04/2009 strain (SEQ ID NO: 46);
ii) includes a sequence substitution relative to the reference at each of the following positions:

Position
Amino

(corresponding to
acid residue

wild type H3 HA)
in reference

186
Ser

189
Ala

219
Ile

227
Glu

and iii) differs from that of each of ADA76, A/duck/Alberta/35/76 (H1N1) (SEQ ID NO: 23); ASI30, A/Swine/Iowa/30 (H1N1) (SEQ ID NO: 24); APR34, A/Puerto Rico/8/34 (H1N1) (SEQ ID NO: 25); ASC18, A/South Carolina/1/18 (H1N1) (SEQ ID NO: 26); AT91, A/Texas/36/91 (H1N1) (SEQ ID NO: 27); ANY18, A/New York/1/18 (H1N1) (SEQ ID NO: 28); ADU63, A/Duck/Ukraine/1/63 (H3N8) (SEQ ID NO: 29); AAI68, A/Aichi/2/68 (H3N2) (SEQ ID NO: 30); AM99, A/Moscow/10/99 (H3N2) (SEQ ID NO: 31); ADS97, A/Duck/Singapore/3/97 (H5N3) (SEQ ID NO: 32); Viet04, A/Vietnam/1203/2004 (H5N1) (SEQ ID NO: 33).

2. A pharmaceutical composition comprising the H1 HA polypeptide variant of claim 1 .

3. A method of treating influenza infection by administering a composition comprising the H1 HA polypeptide variant of claim 1 to a subject.

4. A vaccine composition comprising the H1 HA polypeptide variant of claim 1 .

5. A method comprising administering the vaccine composition of claim 4 to an individual suffering from or susceptible to influenza virus infection.

6. The H1 HA polypeptide variant of claim 1 , wherein the variant residue at position 219 is Lys.

7. The H1 HA polypeptide variant of claim 1 , wherein the variant residue at position 186 is Pro.

8. The H1 HA polypeptide variant of claim 1 , wherein the variant residue at position 189 is Thr.

9. The H1 HA polypeptide variant of claim 1 , wherein the variant residue at position 227 is Ala.

10. The H1 HA polypeptide variant of claim 1 , whose amino acid sequence further includes one or more sequence substitutions relative to the reference at positions selected from the group consisting of: 98, 136, 137, 138, 145, 153, 155, 156, 159, 183, 187, 190, 192, 193, 194, 195, 196, 215, 222, 225, 226, 228, and combinations thereof, corresponding to positions in wild type H3 HA sequence.

11. The H1 HA polypeptide variant of claim 10 , wherein the variant residue at position 225 is selected from the group consisting of Asn, Gly, and Glu.

12. The H1 HA polypeptide variant of claim 10 , wherein the variant residue at position 145 is selected from the group consisting of Ser and Asn.

Assignees

• Jayaraman Akila
• Viswanathan Karthik
• Raman Rahul
• Shriver Zachary H
• Sasisekharan Ram
• Massachusetts Inst Technology

Inventors

• Jayaraman Akila
• Viswanathan Karthik
• Raman Rahul
• Shriver Zachary H
• Sasisekharan Ram

Classifications

• G01N33/56983 Primary

  Viruses · CPC title

• A61P37/04

  Immunostimulants · CPC title

• C07K14/005 Primary

  from viruses · CPC title

• C12N2760/16122

  New viral proteins or individual genes, new structural or functional aspects of known viral proteins or genes · CPC title

• A61P31/16

  for influenza or rhinoviruses · CPC title