Molecular characterization with molecular speed control

Patent metadata

Field	Value
Publication number	US-9274097-B2
Application number	US-201113040537-A
Country	US
Kind code	B2
Filing date	Mar 4, 2011
Priority date	Apr 6, 2005
Publication date	Mar 1, 2016
Grant date	Mar 1, 2016

Abstract

Provided is a first reservoir for containing a liquid solution including a molecule to be characterized and a second reservoir for containing a liquid solution. A solid state support includes a nanopore having a molecular inlet providing a fluidic connection to the first reservoir and a molecular outlet providing a fluidic connection to the second reservoir. An electrical connection is disposed between the first and second reservoirs to apply a molecular translocation voltage across the nanopore between the molecular inlet entrance and outlet exit. At least one electrical probe is disposed at the nanopore to apply a first voltage bias with respect to translocation voltage to slow progression of a molecule through the nanopore between the molecular inlet and outlet and to apply a second voltage bias with respect to translocation voltage to cause the molecule to proceed through the nanopore between the molecular inlet and outlet.

First claim

We claim:

1. A method for controlling translocation of an electrically charged molecule through a nanopore comprising:
applying a molecular translocation voltage across a nanopore between a molecular inlet entrance at the nanopore and a molecular outlet exit at the nanopore;
applying to at least one electrically conducting probe disposed at the nanopore a first voltage bias with respect to the translocation voltage, while the translocation voltage is applied across the nanopore, to slow progression of a molecule through the nanopore between the molecular inlet and the molecular outlet;
electrically detecting the molecule at the nanopore while the first voltage bias is applied; and
applying to at least one electrically conducting probe disposed at the nanopore a second voltage bias will respect to the translocation voltage, while the translocation voltage is applied across the nanopore, to cause the molecule to proceed through the nanopore between the molecular inlet entrance and the molecular outlet exit at the nanopore.

2. The method of claim 1 wherein the molecule is provided in an electrolytic solution and wherein the translocation voltage is applied by controlling a nanopore molecular entrance voltage relative to a nanopore molecular exit voltage to electrophoretically cause translocation of the molecule in solution through the nanopore between the molecular inlet and the molecular outlet.

3. The method of claim 2 wherein applying a first voltage bias with respect to the translocation voltage comprises applying the first voltage bias with respect to a voltage of the electrolytic solution.

4. The method of claim 3 wherein applying a second voltage bias with respect to the translocation voltage comprises applying the second voltage bias with respect to a voltage of the electrolytic solution.

5. The method of claim 1 wherein applying a second voltage bias comprises reversing the first voltage bias.

6. The method of claim 1 wherein the molecule progressing through the nanopore comprises a polymer biomolecule selected from the group consisting of proteins, polynucleic acids, DNA, and RNA.

7. The method of claim 1 wherein the molecule progressing through the nanopore comprises ssDNA.

8. The method of claim 7 further comprising repeating application of the first and second voltage biases during progression of the ssDNA through the nanopore, and wherein electrically detecting the molecule at the nanopore while the first voltage bias is applied comprises detecting a nucleotide along the ssDNA while the first voltage bias is applied.

9. The method of claim 7 further comprising detecting sequential bases of DNA as the bases progress through the nanopore.

10. The method of claim 1 wherein slowing progression of the molecule through the nanopore by application of the first voltage bias comprises substantially halting progression of the molecule through the nanopore by application of the first voltage bias.

11. The method of claim 1 wherein detecting the molecule comprises detecting a reduction in ionic current through the nanopore.

12. The method of claim 1 wherein detecting the molecule comprises detecting changes in electron transport between the at least one electrically conducting probe and a second electrically conducting probe disposed at the nanopore.

13. The method of claim 1 wherein detecting the molecule comprises detecting a modulation in electron tunneling between the at least one electrically conducting probe and a second electrically conducting probe disposed at the nanopore.

14. The method of claim 1 wherein detecting the molecule comprises detecting changes in conductance of a carbon nanotube that is disposed at the nanopore.

15. The method of claim 1 wherein the nanopore is characterized by a diameter that is sufficiently small to permit only a single molecule at a time to progress through the nanopore.

16. The method of claim 1 wherein the at least one electrically conducting probe comprises a carbon nanotube.

17. The method of claim 1 wherein applying a molecular translocation voltage across a nanopore between a molecular inlet entrance at the nanopore and a molecular outlet exit comprises applying a molecular translocation voltage across a membrane in which the nanopore is disposed.

18. The method of claim 17 wherein the nanopore disposed in the membrane is coated by an electrically insulating material layer.

19. The method of claim 17 wherein the membrane comprises a silicon nitride membrane.

Assignees

• Golovchenko Jene A
• Branton Daniel
• Harvard College

Inventors

• Golovchenko Jene A
• Branton Daniel

Classifications

• C12Q1/6869 Primary

  Methods for sequencing · CPC title

• B82Y15/00

  Nanotechnology for interacting, sensing or actuating, e.g. quantum dots as markers in protein assays or molecular motors · CPC title

• Y10S977/762

  Nanowire or quantum wire, i.e. axially elongated structure having two dimensions of 100 nm or less · CPC title

• C12Q2565/631

  being a biochannel or pore · CPC title

• G01N33/48721 Primary

  Investigating individual macromolecules, e.g. by translocation through nanopores (Coulter counters in general G01N15/12; fabrication methods for nanoscale apertures B81B1/00; sequencing of nucleic acids C12Q1/68) · CPC title