SERPINA1 iRNA COMPOSITIONS AND METHODS OF USE THEREOF

Patent metadata

Field	Value
Publication number	US-2025043279-A1
Application number	US-202418644183-A
Country	US
Kind code	A1
Filing date	Apr 24, 2024
Priority date	Nov 23, 2016
Publication date	Feb 6, 2025
Grant date	—

Abstract

The invention relates to RNAi agents, e.g., double stranded RNAi agents, targeting the Serpina1 gene, and methods of using such RNAi agents to inhibit expression of Serpina1 and methods of treating subjects having a Serpina1 associated disease, such as a liver disorder.

First claim

1 . A double stranded RNA (dsRNA) agent that inhibits expression of a serine peptidase inhibitor, clade A, member 1 (Serpina1) gene, comprising a sense strand and an antisense strand forming a double stranded region, said antisense strand comprising a region of complementarity to an mRNA encoding Serpina1, wherein the region of complementarity comprises at least 15 contiguous nucleotides differing by no more than 3 nucleotides from the nucleotide sequence of SEQ ID NO:15,
wherein said antisense strand comprises at least one thermally destabilizing modification within the first 9 nucleotide positions of the 5′ region or a precursor thereof, wherein said sense strand comprises an ASGPR ligand, wherein each of the sense strand and the antisense strand are independently 14 to 40 nucleotides in length.

2 . The dsRNA agent according to claim 1 , wherein the dsRNA agent comprises at least four nucleotides comprising a 2′-fluoro modification; or
wherein the dsRNA agent has the following characteristics:

a) the thermally destabilizing modification is located in position 4-8 of the 5′ region of the antisense strand;
b) each of the sense and antisense strands independently comprise at least two nucleotides comprising a 2′-fluoro modification; and
c) an ASGPR ligand attached to either end of the sense strand.

3 . The dsRNA agent according to claim 1 , wherein the antisense strand has at least two of the following characteristics:
a) the thermally destabilizing modification is located in position 4 to 8 of the antisense strand; b) at least two nucleotides comprise a 2′-fluoro modification; c) a phosphorothioate internucleotide linkage between nucleotide positions 1 and 2 (counting from the 5′ end); d) a length of 18 to 35 nucleotides.

4 . The dsRNA agent according to claim 1 , having at least one of the following characteristics:
a) the ASGPR ligand attached to either end of the sense strand; b) at least two nucleotides comprise a 2′-fluoro modification; c) the double stranded region spans at least 19 nucleotide positions and wherein the thermally destabilizing modification is located within said double stranded region.

5 . The dsRNA agent according to claim 1 , wherein the thermally destabilizing modification is selected from the group consisting of

wherein B is nucleobase.

6 . The dsRNA agent according to claim 1 , wherein the ASGPR ligand is one or more GalNAc derivatives attached through a bivalent or trivalent branched linker.

7 . A double stranded RNA (dsRNA) agent that inhibits expression of a serine peptidase inhibitor, clade A, member 1 (Serpina1) target gene sequence, comprising a sense strand and an antisense strand, said antisense strand comprising a region of complementarity to an mRNA encoding Serpina1, wherein the region of complementarity comprises at least 15 contiguous nucleotides differing by no more than 3 nucleotides from the nucleotide sequence of SEQ ID NO:15,
wherein the antisense strand comprises at least one thermally destabilizing modification within the first 9 nucleotide positions of the 5′ region, wherein each of the sense strand and the antisense strand are independently 14 to 40 nucleotides in length, and wherein the dsRNA agent has a melting temperature of from about 40° C. to about 80° C.

8 . The dsRNA agent of claim 7 , further comprising an ASGPR ligand.

9 . The dsRNA agent of claim 8 , wherein the ASGPR ligand is one or more GalNAc derivatives attached through a bivalent or trivalent branched linker.

10 . The dsRNA agent of claim 1 , wherein each strand has 15-30 nucleotides; or 19-30 nucleotides.

11 . The dsRNA agent of claim 1 , wherein the antisense strand comprises a region of complementarity comprising at least 15 contiguous nucleotides differing by no more than 3 nucleotides from nucleotides 1440-1480 of SEQ ID NO:1.

12 . The dsRNA agent of claim 1 , wherein the region of complementarity comprises at least 15 contiguous nucleotides differing by no more than 3 nucleotides from the nucleotide sequence 5′-UUUUGUUCAAUCAUUAAGAAGAC-3′ (SEQ ID NO: 419).

13 . An isolated cell containing the dsRNA agent of claim 1 .

14 . A pharmaceutical composition comprising the dsRNA agent of claim 1 .

15 . A method of inhibiting Serpina1 expression in a cell, the method comprising contacting the cell with the dsRNA agent of claim 1 , thereby inhibiting expression of the Serpina1 gene in the cell.

16 . The method of claim 15 , wherein said cell is within a subject.

17 . The method of claim 16 , wherein the subject is a human.

18 . A method of treating a subject having a Serpina1 associated disease, comprising administering to the subject a therapeutically effective amount of the dsRNA agent of claim 1 , thereby treating said subject.

19 . A method of inhibiting development of hepatocellular carcinoma in a subject having a Serpina1 deficiency variant, comprising administering to the subject a therapeutically effective amount of the dsRNA agent of claim 1 , thereby inhibiting development of hepatocellular carcinoma in the subject.

20 . A method of reducing the accumulation of misfolded Serpina1 in the liver of a subject having a Serpina1 deficiency variant, comprising administering to the subject a therapeutically effective amount of the dsRNA agent of claim 1 , thereby reducing the accumulation of misfolded Serpina1 in the liver of the subject.

Assignees

• Alnylam Pharmaceuticals Inc

Inventors

• Schlegel Mark K
• Janas Maja
• Jadhav Vasant R
• Foster Donald
• Manoharan Muthiah
• Rajeev Kallanthottathil G
• Kel'In Alexander V
• Charisse Klaus
• Nair Jayaprakash K
• Maier Martin A
• Matsuda Shigeo
• Jayaraman Muthusamy
• Sehgal Alfica
• Brown Christopher
• Fitzgerald Kevin
• Milstein Stuart

Classifications

• C12N2310/351

  Conjugate · CPC title

• C12N2310/315

  Phosphorothioates · CPC title

• C12N2310/14

  interfering nucleic acids [NA] · CPC title

• A61P35/00

  Antineoplastic agents · CPC title

• C12N15/85

  for animal cells · CPC title