Charged mass labeling system

Patent metadata

Field	Value
Publication number	US-2024393346-A1
Application number	US-202418750036-A
Country	US
Kind code	A1
Filing date	Jun 21, 2024
Priority date	Jan 22, 2016
Publication date	Nov 28, 2024
Grant date	—

Abstract

The invention generally relates to charged mass label compositions and methods of use thereof for detecting a target analyte in a sample. In certain aspects, the invention provides a charged mass label composition including an affinity reagent, and a mass label precursor bound to the affinity reagent. The mass label precursor includes a label binding unit and a mass label. The label binding unit reversibly binds the mass label to the affinity reagent. The mass label includes a charge unit and a mass label unit having a pre-defined mass-to-charge-value in a mass spectrum.

First claim

1 - 20 . (canceled)

21 . A method for detecting a cancer cell in a sample, the method comprising:
introducing a charged mass label composition to a sample comprising a cancel, wherein the charged mass label composition comprises an affinity reagent; and a mass label precursor bound to the affinity reagent, wherein the mass label precursor comprises a label binding unit and a mass label, the label binding unit reversibly binding the mass label to the affinity reagent, and wherein the mass label comprises a charge unit and a mass label unit having a pre-defined mass-to-charge-value in a mass spectrum, wherein the label binding unit comprises L-carnitine-F-G-G-S-C and biotin coupled to propylamine functionalized silica with a cleavable disulfide bond linker arm; incubating the sample and the charged mass label composition so that the charged mass label composition binds the cancer cell via an interaction between the affinity reagent of the charged mass label composition and the cancer cell; releasing the mass label from the affinity reagent by breaking one or more bonds of the label binding unit; ionizing the mass label; and detecting the ionized mass label and/or fragments thereof in a mass spectrometer, thereby detecting the cancer cell in the sample.

22 . The method according to claim 21 , wherein the sample is a biological sample.

23 . The method according to claim 21 , wherein the cancer cell is a rare biological molecule.

24 . The method according to claim 21 , wherein presence of the cancer cell is indicative of a disease state.

25 . The method according to claim 21 , wherein quantifying presence of the cancer cell is indicative of progression of the disease state.

26 . The method according to claim 21 , further comprising quantifying the ionized mass label and/or fragments thereof, thereby quantifying the cancer cell in the sample.

27 . The charged mass label composition according to claim 21 , wherein the pre-defined mass-to-charge-value in the mass spectrum of the mass label or one or more fragments of the mass label is different from background mass-to-charge-values in the mass spectrum.

Assignees

• Purdue Research Foundation

Inventors

• Cooks Robert Graham
• Baird Zane
• Pugia Michael
• Hollerbach Adam
• Ayrton Stephen

Classifications

• G01N33/575

  for cancer · CPC title

• G01N33/57575

  involving oncogenic proteins · CPC title

• G01N2560/00

  Chemical aspects of mass spectrometric analysis of biological material · CPC title

• G01N33/531

  Production of immunochemical test materials · CPC title

• G01N2458/00

  Labels used in chemical analysis of biological material · CPC title