Methods for identifying carrier status and assessing risk for spinal muscular atrophy

Patent metadata

Field	Value
Publication number	US-2020392569-A1
Application number	US-202016912597-A
Country	US
Kind code	A1
Filing date	Jun 25, 2020
Priority date	Dec 31, 2017
Publication date	Dec 17, 2020
Grant date	—

Abstract

Disclosed is a method of determining whether a human subject is not a carrier of spinal muscular atrophy (SMA). This method includes the steps of (i) collecting a genomic deoxyribonucleic acid (DNA) sample from a human subject; (ii) screening the genomic DNA sample to determine the human subject's copy number of survival of motor neuron 1 (SMN1) gene and whether one of the copies of the SMN1 gene is positive for a polymorphism associated with non-carriers of SMA having two copies of the SMN1 gene; and (iii) determining the human subject as not a carrier of SMA if the human subject includes two copies of the SMN1 gene with one of those copies being positive for the polymorphism. Also disclosed is a method of determining whether an individual has a decreased risk of being a carrier of spinal muscular atrophy (SMA), where the individual is identified to have a decreased risk of being a carrier of SMA when the individual has two copies of the SMN1 gene with one of those copies being positive for the polymorphism.

First claim

What is claimed is:

1 . A method of determining whether a human subject is not a carrier of spinal muscular atrophy (SMA), said method comprising:
collecting a genomic deoxyribonucleic acid (DNA) sample from a human subject; screening the genomic DNA sample to determine the human subject's copy number of survival of motor neuron 1 (SMN1) gene and whether one of the copies of the SMN1 gene is positive for a polymorphism associated with non-carriers of SMA having two copies of the SMN1 gene; and determining the human subject as not a carrier of SMA if the human subject includes two copies of the SMN1 gene with one of those copies being positive for the polymorphism.

2 . The method according to claim 1 , wherein the polymorphism is a single-nucleotide polymorphism (SNP) in intron 7 of the SMN1 gene.

3 . The method according to claim 2 , wherein the SNP is g.27134T>G.

4 . The method according to claim 1 , wherein determining the human subject as not a carrier of SMA includes identifying the human subject to have one copy of the SMN1 gene on each of the human subject's two 5q13.2 chromosomes, with one of the SMN1 genes also being positive for the g.27134T>G SNP.

5 . The method according to claim 1 further comprising:
providing the human subject a risk assessment of being a non-carrier (1+1), carrier (1+0), or silent carrier (2+0) of SMA based on the copy number of the SMN1 gene and the presence or absence of the g.27134T>G SNP on one of the SMN1 genes.

6 . A method of determining whether an individual has a decreased risk of being a carrier of spinal muscular atrophy (SMA), said method comprising:
screening a genomic DNA sample of an individual to determine the individual's copy number of survival of motor neuron 1 (SMN1) gene and whether one of the copies of the SMN1 gene is positive for a polymorphism associated with non-carriers of SMA who have at least two copies of the SMN1 gene; and determining the individual to have a decreased risk of being a carrier of SMA if the screening of the genomic DNA sample identifies two copies of the SMN1 gene with one of those copies being positive for the polymorphism.

7 . The method according to claim 6 , wherein the polymorphism is a single-nucleotide polymorphism (SNP) in intron 7 of the SMN1 gene.

8 . The method according to claim 7 , wherein the SNP is g.27134T>G.

9 . The method according to claim 6 , wherein determining the individual to have a decreased risk of being a carrier of SMA includes identifying the individual as having one copy of the SMN1 gene on each of the individual's two 513.2 chromosomes, with one of the SMN1 genes also being positive for the g.27134T>G SNP.

10 . The method according to claim 6 further comprising:
counseling the individual of the individual's decreased risk of being a carrier (1+0) or silent carrier (2+0) of SMA based on the individual's copy number of the SMN1 gene and the presence or absence of the g.27134T>G SNP on one of the SMN1 genes.

11 . The method according to claim 6 further comprising:
collecting the genomic DNA sample from the individual prior to the screening step.

Assignees

• Myriad Womens Health Inc

Inventors

• Davison Daniel Edmund

Classifications

• C12Q1/6883 Primary

  for diseases caused by alterations of genetic material · CPC title

• C12Q2600/156

  Polymorphic or mutational markers · CPC title

• C12Q1/6827 Primary

  for detection of mutation or polymorphism · CPC title