Method for quantitatively detecting vbnc state bacteria

Patent metadata

Field	Value
Publication number	US-2020340040-A1
Application number	US-201816963144-A
Country	US
Kind code	A1
Filing date	Jan 19, 2018
Priority date	Jan 19, 2018
Publication date	Oct 29, 2020
Grant date	—

Abstract

The present invention discloses a method for quantitatively detecting VBNC state bacteria. The method of the present invention comprises the following steps: treating HPCD-induced VBNC state E. coli O157:H7 with PMA to eliminate the impact of dead and damaged bacteria in the sample on quantification; using the genomic DNA of PMA-treated VBNC state bacteria as a template, ddPCR was performed. The present invention establishes a PMA-ddPCR detection method for rapid quantitative detection of the number of VBNC state bacteria. The detection method of the present invention can achieve accurate detection and quantification of VBNC state bacteria within 4-6 h with a detection range of 10 1 -10 7 and a quantitative range of 10 2 -10 7 . This method not only has the advantages of strong specificity and high sensitivity, but also has the advantages of accurate quantification, reliable results, simplicity and time saving. The present invention is of great significance both for the detection and quantification of VBNC state bacteria in food and for the management and monitoring of food safety.

First claim

What is claimed is:

1 . A method for quantitatively detecting VBNC state bacteria, comprising the following steps:
1) treating the VBNC state bacteria to be tested with propidium monoazide to obtain propidium monoazide-treated bacteria; 2) performing ddPCR amplification on a target gene in the VBNC state bacteria to be tested with the genomic DNA of the propidium monoazide-treated bacteria as a template to obtain a copy number of the target gene; 3) determining the number of the VBNC state bacteria to be tested according to the copy number of the target gene.

2 . The method according to claim 1 , wherein the method for treating the VBNC state bacteria to be tested with propidium monoazide comprises the following steps: mixing the bacteria solution of the VBNC state bacteria to be tested with propidium monoazide and incubating the resulting mixture to obtain an incubation product; subjecting the incubation product to light treatment to obtain the propidium monoazide-treated bacteria.

3 . The method according to claim 2 , wherein the ratio of the VBNC state bacteria to be tested to propidium monoazide is 1×10 7 CFU:(15-23) μg.

4 . The method according to claim 2 , wherein the incubation condition is 30° C. for 15-30 min.

5 . The method according to claim 2 , wherein the light treatment is illuminating the incubation product at a distance of 20 cm from a 500 W halogen lamp for 10-20 min.

6 . The method according to claim 1 , wherein the bacteria are E. coli strains.

7 . The method according to claim 6 , wherein the E. coli strains are E. coli O157:H7 strains.

8 . The method according to claim 7 , wherein the target gene in the E. coli O157:H7 strains is rfbe gene.

9 . The method according to claim 8 , wherein the primer pair used for the ddPCR amplification of the rfbe gene consists of the single-stranded DNA molecule set forth in SEQ ID NO: 1 and the single-stranded DNA molecule set forth in SEQ ID NO: 2.

10 . The method according to claim 9 , wherein the final concentration of each primer in the primer pair in ddPCR amplification reaction system is 500 nmol/L.

11 . The method according to claim 9 , wherein the annealing temperature of the ddPCR amplification of the rfbe gene is 60° C.

12 - 13 . (canceled)

14 . A method for quantitatively detecting VBNC state bacteria in a sample to be tested, comprising the following steps:
1) treating the sample to be tested with propidium monoazide to obtain a propidium monoazide-treated sample; 2) performing ddPCR amplification on a target gene in the VBNC state bacteria in the sample to be tested with the genomic DNA of the propidium monoazide-treated sample as a template to obtain a copy number of the target gene; 3) determining the number of the VBNC state bacteria in the sample to be tested according to the copy number of the target gene.

15 . The method according to claim 14 , wherein the method for treating the sample to be tested with propidium monoazide comprises the following steps: mixing the sample to be tested with propidium monoazide and incubating the resulting mixture to obtain an incubation product; subjecting the incubation product to light treatment to obtain the propidium monoazide-treated sample.

16 . The method according to claim 15 , wherein the incubation condition is 30° C. for 15-30 min.

17 . The method according to claim 15 , wherein the light treatment is illuminating the incubation product at a distance of 20 cm from a 500 W halogen lamp for 10-20 min.

18 . A kit for quantitative detection of VBNC state bacteria, comprising propidium monoazide and a primer pair used for ddPCR amplification of a target gene in the bacteria.

19 . The kit according to claim 18 , wherein the bacteria are E. coli strains.

20 . The kit according to claim 18 , wherein the E. coli strains are E. coli O157:H7 strains.

21 . The kit according to claim 18 , wherein the target gene in the E. coli O157:H7 strains is rfbe gene.

22 . The kit according to claim 21 , wherein the primer pair used for the ddPCR amplification of the rfbe gene consists of the single-stranded DNA molecule set forth in SEQ ID NO: 1 and the single-stranded DNA molecule set forth in SEQ ID NO: 2.

Assignees

• Univ China Agricultural

Inventors

• Liao Xiaojun
• Dong Kai
• Pan Hanxu
• Wang Yongtao

Classifications

• C12Q1/689 Primary

  for bacteria · CPC title

• C12Q1/6806

  Preparing nucleic acids for analysis, e.g. for polymerase chain reaction [PCR] assay (C12Q1/6804 takes precedence) · CPC title

• C12Q2600/158

  Expression markers · CPC title

• C12Q1/06

  Quantitative determination · CPC title

• G01N1/28

  Preparing specimens for investigation {including physical details of (bio-)chemical methods covered elsewhere, e.g. G01N33/50, C12Q}(mounting specimens on microscopic slides G02B21/34; means for supporting the objects or the materials to be analysed in electron microscopes H01J37/20 {; laboratory gas handling apparatus B01L5/00}) · CPC title