Il-15/il-15ra heterodimeric fc fusion proteins and uses thereof

Patent metadata

Field	Value
Publication number	US-2019365861-A1
Application number	US-201916388174-A
Country	US
Kind code	A1
Filing date	Apr 18, 2019
Priority date	Apr 18, 2018
Publication date	Dec 5, 2019
Grant date	—

Abstract

The present invention is directed to novel IL-15/IL-15Rα heterodimeric Fc fusion proteins and uses thereof. The IL-15/IL-15Rα heterodimeric Fc fusion proteins can be administered to a patient to treat cancer. In some cases, the IL-15/IL-15Rα heterodimeric Fc fusion protein is administered in combination with a checkpoint blockage antibody such as a PD-1 antibody.

First claim

What is claimed is:

1 . A method of treating cancer in a patient in need thereof comprising administering:
a therapeutically effective amount of an IL-15/IL-15Rα heterodimeric Fc fusion protein comprising:
a) a first monomer comprising, from N- to C-terminal:
i) an IL-15 receptor alpha (IL-15Rα) sushi domain;
ii) a first domain linker; and
iii) a first variant Fc domain comprising CH2-CH3; and

b) a second monomer comprising from N- to C-terminal:
i) a variant IL-15 domain comprising the amino acid sequence of SEQ ID NO:2 and any one of the amino acid substitutions selected from the group consisting of N4D/N65D, D30N/N65D, and D30N/E64Q/N65D;
ii) a second domain linker; and
iii) a second variant Fc domain comprising CH2-CH3;

wherein the first and second variant Fc domains have a set of amino acid substitutions selected from the group consisting of S267K/L368D/K370S:S267K/S364K/E357Q; S364K/E357Q:L368D/K370S; L368D/K370S:S364K; L368E/K370S:S364K; T411E/K360E/Q362E:D401K; L368D/K370S:S364K/E357L and K370S:S364K/E357Q, according to EU numbering; and
a therapeutically effective amount of a checkpoint blockade antibody selected from the group consisting of an anti-PD-1 antibody, an anti-PD-L1 antibody, an anti-TIM3 antibody, an anti-TIGIT antibody, an anti-LAG3 antibody, and an anti-CTLA-4 antibody.

2 . A method of inducing T cell expansion in a patient comprising administering:
a therapeutically effective amount of an IL-15/IL-15Rα heterodimeric Fc fusion protein comprising:
a) a first monomer comprising, from N- to C-terminal:
i) an IL-15 receptor alpha (IL-15Rα) sushi domain;
ii) a first domain linker; and
iii) a first variant Fc domain comprising CH2-CH3; and

b) a second monomer comprising from N- to C-terminal:
i) a variant IL-15 domain comprising the amino acid sequence of SEQ ID NO:2 and any one of the amino acid substitutions selected from the group consisting of N4D/N65D, D30N/N65D, and D30N/E64Q/N65D;
ii) a second domain linker; and
iii) a second variant Fc domain comprising CH2-CH3;

wherein the first and second variant Fc domains have a set of amino acid substitutions selected from the group consisting of S267K/L368D/K370S:S267K/S364K/E357Q; S364K/E357Q:L368D/K370S; L368D/K370S:S364K; L368E/K370S:S364K; T411E/K360E/Q362E:D401K; L368D/K370S:S364K/E357L and K370S:S364K/E357Q, according to EU numbering; and
a therapeutically effective amount of a checkpoint blockade antibody selected from the group consisting of an anti-PD-1 antibody, an anti-PD-L1 antibody, an anti-TIM3 antibody, an anti-TIGIT antibody, an anti-LAG3 antibody, and an anti-CTLA-4 antibody.

3 . The method according to claim 1 or 2 , wherein the variant IL-15 domain comprises the amino acid sequence of SEQ ID NO:2 and the amino acid substitutions D30N/E64Q/N65D.

4 . The method according to any previous claim, wherein the IL-15Rα sushi domain comprises the amino acid sequence of SEQ ID NO:4.

5 . The method according to any previous claim, wherein the first and second variant Fc domains have S364K/E357Q:L368D/K370S substitutions.

6 . The method according to any previous claim, wherein the first variant Fc domain has S364K/E357Q substitutions and the second variant Fc domain L368D/K370S substitutions.

7 . The method according to any previous claim, wherein the first and second variant Fc domains each comprise M428L/N434S substitutions.

8 . The method according to any previous claim, wherein the first and second variant Fc domains each comprise E233P/L234V/L235A/G236del/S267K substitutions.

9 . The method according to any previous claim, wherein the IL-15/IL-15Rα heterodimeric Fc fusion protein and the checkpoint blockade antibody are administered concomitantly or sequentially.

10 . The method according to any previous claim, wherein the anti-PD-1 antibody is nivolumab, pembrolizumab, or pidilizumab.

11 . The method according to any previous claim, wherein the IL-15/IL-15Rα heterodimeric Fc fusion protein comprises the amino acid sequence of XENP24306 or XENP24045.

12 . The method according to claim 11 , wherein the IL-15/IL-15Rα heterodimeric Fc fusion protein comprises the amino acid sequence of XENP24306 (SEQ ID NO:XX) and the anti-PD-1 antibody is nivolumab.

13 . The method according to claim 11 , wherein the IL-15/IL-15Rα heterodimeric Fc fusion protein comprises the amino acid sequence of XENP24306 (SEQ ID NO:XX) and the anti-PD-1 antibody is pembrolizumab.

14 . The method according to claim 11 , wherein the IL-15/IL-15Rα heterodimeric Fc fusion protein comprises the amino acid sequence of XENP24306 (SEQ ID NO:XX) and the anti-PD-1 antibody is pidilizumab.

15 . The method according to claim 11 , wherein the IL-15/IL-15Rα heterodimeric Fc fusion protein comprises the amino acid sequence of XENP24045 (SEQ ID NO:XX) and the anti-PD-1 antibody is nivolumab.

16 . The method according to claim 11 , wherein the IL-15/IL-15Rα heterodimeric Fc fusion protein comprises the amino acid sequence of XENP24045 (SEQ ID NO:XX) and the anti-PD-1 antibody is pembrolizumab.

17 . The method according to claim 11 , wherein the IL-15/IL-15Rα heterodimeric Fc fusion protein comprises the amino acid sequence of XENP24045 (SEQ ID NO:XX) and the anti-PD-1 antibody is pidilizumab.

18 . The method according to any previous claim, wherein the cancer is metastatic cancer.

19 . The method according to any previous claim, wherein the cancer is selected from the group consisting of breast cancer, lung cancer, colon cancer, ovarian cancer, melanoma cancer, bladder cancer, renal cancer, kidney cancer, liver cancer, head and neck cancer, colorectal cancer, melanoma, pancreatic cancer, gastric carcinoma cancer, esophageal cancer, mesothelioma, prostate cancer, leukemia, lymphoma, and myeloma.

20 . The method according to any previous claim, wherein the method results in a minimal level of vascular leakage in the patient.

21 . The method according to claim 20 , wherein the level of vascular leakage ranges from a 20% reduction or less in serum albumin in the patient following administration.

22 . The method according to any one of claims 2 to 21 , wherein the T cell expansion is at least a 2-fold increase in T cells.

23 . The method according to any one of claims 2 to 22 , wherein the T cell expansion ranges from a 2-fold to a 15-fold increase in T cells.

24 . The method according to any one of claims 1 to 23 , wherein the method does not increase the likelihood of inducing hypoalbuminemia.

25 . The method according to any one of claims 2 to 24 , wherein the T cells comprise tumor infiltrating lymphocytes.

26 . A combination therapy comprises an IL-15/IL-15Rα heterodimeric Fc fusion protein and a checkpoint blockade antibody selected from an anti-PD-1 antibody, an anti-PD-L1 antibody, an anti-TIM3 antibody, an anti-TIGIT antibody, an anti-LAG3 antibody, and an anti-CTLA-4 antibody,
wherein the IL-15/IL-15Rα heterodimeric Fc fusion protein comprises:
a) a first monomer comprising, from N- to C-terminal:
i) an IL-15 receptor alpha (IL-15Rα) sushi domain;
ii) a first domain linker; and
iii) a first variant Fc domain comprising CH2-CH3; and

b) a second monomer comprising from N- to C-terminal:
i) a variant IL-15 domain comprising the amino acid sequence of SEQ ID NO:2 and any one of the amino acid substitutions selected from the group consisting of N4D/N65D, D30N/N65D, and D30N/E64Q/N

Assignees

• Xencor Inc

Inventors

• Bernett Matthew
• Desjarlais John
• Rashid Rumana
• Varma Rajat
• Bonzon Christine

Classifications

• C07K16/2818 Primary

  against CD28 or CD152 · CPC title

• C07K16/289

  against CD45 · CPC title

• C07K2317/24

  containing regions, domains or residues from different species, e.g. chimeric, humanized or veneered · CPC title

• C07K2317/526

  CH3 domain · CPC title

• A61K38/1793

  for cytokines; for lymphokines; for interferons · CPC title