Method and apparatus for the detection of bacteria

Patent metadata

Field	Value
Publication number	US-2018339293-A1
Application number	US-201615777662-A
Country	US
Kind code	A1
Filing date	Nov 18, 2016
Priority date	Nov 20, 2015
Publication date	Nov 29, 2018
Grant date	—

Abstract

The present invention relates to a fast, simple and very sensitive method for the detection of bacteria, comprising the steps of providing one or more suspensions each comprising at least one species of labeled test bacteriophages which specifically bind to a bacterial species to be detected; adding a sample to be tested for the presence of at least one bacterial species to be detected to the one or more suspensions; filtering the reaction mixture; detecting bacteria-bacteriophages-complexes on the surface of the filter in the retentate, provided that at least one bacterial species to be detected is present, wherein the complexes consist of bacteria of the at least one bacterial species to be detected and test bacteriophages of the at least one species of test bacteriophages bound thereto; detecting unbound test bacteriophages in the filtrate; processor-aided processing of received detection signals and output of detection results. Further, a reaction vessel and a measuring instrument for carrying out the method are disclosed.

First claim

1 . A method for the detection of bacteria comprising the steps of
A) provision of one or more suspensions each comprising at least one species of labelled test bacteriophages which specifically bind to a bacterial species to be detected; B) addition of a sample to be tested for the presence of at least one bacterial species to be detected to the one or more suspensions; C) filtration of the resulting reaction mixture, wherein a filter with a pore size of 0.1 μm to 0.5 μm is used; D) detection of bacteria-bacteriophages-complexes in the retentate, provided that at least one bacterial species to be detected is present, wherein the complexes consist of bacteria of the at least one bacterial species to be detected and test bacteriophages of the at least one species of test bacteriophages bound thereto; E) detection of unbound test bacteriophages in the filtrate; F) processor-aided processing of received signals generated by the detection in steps D) and E) and output of detection results to a user, wherein the one or more suspensions further comprise a labelled reference bacteriophage which does not bind to any bacterial species to be detected and which has a label disjunct from the test bacteriophages such that labelled reference bacteriophage is also detected in step E); or wherein labelled micro- or nanoparticles are used in alternative to a labelled reference bacteriophage, which do not bind to any bacterial species to be detected and can pass through the filter due to their small size.

2 . The method for the detection of bacteria according to claim 1 , wherein the bacterial species to be detected are selected from the group comprising Staphylococcus aureus , Methicillin-resistant Staphylococcus aureus (MRSA), Staphylocossus epidermidis, Streptococcus pneumoniae, Streptococcus pyogenes, Haemophilus influenzae, Haemophilus parainfluenzae, Klebsiella pneumoniae, Escherichia coli, Escherichia hermannii , EHEC, Enterobacter cloacae, Enterococcus faecalis, Enterococcus faecum, Pseudomonas aeruginosa, Proteus mirabilis, Proteus vulgaris, Staphylococcus saprophyticus, Bacteroides fragilis, Entercoccus faecium, Enterobacter aerogenes, Serratia marcescens , B- Streptococcus ( agalactiae ), Chlamydia trachomatis, Chlamydia psittaci, Ureaplasma urealyticum, Mycoplasma hominis, Mycoplasma pneumoniae, Neisseria gonorrhoeae, Neisseria meningitidis, Citrobacter freundii, Moraxella catarrhalis, Stenotrophomonas maltophilia, Pasteurella multocida, Acinetobacter baumannii, Providencia rettgeri, Bordetella pertussis, Bacillus anthracis, Bacillus cereus, Brucella abortus, Brucella melitensis, Clostridium butolinum, Clostridium difficile, Clostridium tetani, Clostridium perfringens, Clamydia trachomatis, Corynebacterium diphtheriae, Francisella tularensis, Gardenella vaginalis, Listeria monocytogenes, Morganella morganii, Mycobacterium leprae, Mycobacterium tuberculosis, Nocardia asteriodes, Salmonella bongori, Salmonella enterica, Shigella spp., Vibrio cholerae, Borrelia burgdorferi, Yersinia pestis, Yersinia enterocolitica, Coxiella burnettii, Aeromonas spp., Plesiomonas spp., Xanthomonas maltophilia, Treponema pallidum, Eikenella corrodens, Spirillum minus, Rickettsia prowazeki, Rickettsia rickettsii, Rickettsia conorii, Cronobacter spp., Campylobacter spp. and Legionella pneumophilia.

3 . The method for the detection of bacteria according to claim 1 , wherein the one or more suspensions each comprise two or more species of labeled test bacteriophages which each specifically bind to different bacterial species to be detected and wherein the labels of the species are disjunct or partially overlapping and wherein the label is characteristic of the respective species of test bacteriophages.

4 . The method for the detection of bacteria according to claim 1 , wherein the label comprises at least one reporter molecule having fluorescent or chemiluminescent properties or at least one reporter molecule which emits light by interaction with a secondary molecule.

5 . The method for the detection of bacteria according to claim 4 , wherein the label consists of at least one fluorescent reporter molecule, respectively, and the detection is carried out by measuring the fluorescence, wherein the excitation of at least one fluorescent reporter molecule is carried out in the wavelength range of from 200-1000 nm.

6 . The method for the detection of bacteria according to claim 4 , wherein the at least one reporter molecule is coupled to proteins in the capsid region of the bacteriophages.

7 . Method for the detection of bacteria according to claim 4 , wherein the detection is carried out by time-resolved measurement of the light emission.

8 . The method for the detection of bacteria according to claim 1 , further comprising a step G) of mixing the sample with the one or more suspensions and incubating the resulting reaction mixture, wherein step G) follows step B).

9 . The method for the detection of bacteria according to claim 1 , further comprising the step of a pre-separation of bacteria-bacteriophages-complexes and unbound bacteriophages, wherein the pre-separation follows step B) or G).

10 . A reaction vessel for the detection of bacteria, comprising
at least two compartments separated from each other by a filter,
wherein the filter has a pore size of 0.1 μm to 0.5 μm
wherein one compartment is a phage reservoir containing a suspension which comprises at least one species of labeled test bacteriophages that specifically bind to a bacterial species to be detected, and
one compartment is a collection reservoir for receiving the filtrate after the addition of a sample to the suspension and filtration through the filter;
a means for identifying the reaction vessel; and at least two measurement windows,
wherein one measurement window is arranged in the region of the filter surface facing the phage reservoir, and
one measuring window is arranged in the region of the collection reservoir,
wherein the suspension further comprises a labelled reference bacteriophage which does not bind to any bacterial species to be detected and which has a label disjunct from the test bacteriophages; or wherein the reaction vessel comprises a further compartment, which contains an indicator solution with labeled micro- or nanoparticles that do not bind to any bacterial species to be detected and that may pass through the filter due to their small size.

11 . The reaction vessel according to claim 10 , wherein the suspension comprises two or more species of labeled test bacteriophages which each specifically bind to different bacterial species to be detected and wherein the labels of the species are disjunct or partially overlapping and wherein the label is characteristic of the respective species of test bacteriophages.

12 . The reaction vessel according to claim 10 , further comprising a compartment between the phage reservoir and the filter, which contains at least one pre-filter.

13 . A cartridge, comprising
two or more reaction vessels according to claim 10 , which are arranged parallel and/or in series to each other, wherein each parallel reaction vessel contains different species of labeled test bacteriophages in the suspension of the phage reservoir, each specifically binding to different bacterial species to be detected.

14 . The cartridge according to claim 13 , wherein the labels of the different species of labeled test bacteriophages are disjunct or partially overlapping.

15 . A measuring device for the detection of bacteria, comprising
a slot into which a reaction vessel according to claim 10 is inserted; at least

Assignees

• Sinamira AG
• Univ Friedrich Alexander Er
• Sinamira AG
• Friedrich Alexander Univ Erlangen Nurnberg

Inventors

• Miedl Walter
• Friedrich Oliver
• Gilbert Daniel

Classifications

• B01L2300/022

  Transponder chips · CPC title

• B01L2300/021

  Identification, e.g. bar codes · CPC title

• B01L3/502 Primary

  with fluid transport, e.g. in multi-compartment structures · CPC title

• B01L2300/0816

  Cards, e.g. flat sample carriers usually with flow in two horizontal directions · CPC title

• B01L2300/0654

  Lenses; Optical fibres · CPC title