Method of increasing biomass and lipid content in a micro-organism and a genetically modified micro-organism exhibiting enhanced autophagy

Patent metadata

Field	Value
Publication number	US-2016369307-A1
Application number	US-201515110683-A
Country	US
Kind code	A1
Filing date	Jan 9, 2015
Priority date	Jan 10, 2014
Publication date	Dec 22, 2016
Grant date	—

Abstract

According to an embodiment of the invention, there is provided a method of increasing biomass and lipid content in a micro-organism comprising cloning in a vector an exogenous gene sequence selected from the group comprising Atg1 gene, Atg6 gene, and Atg8 gene sequence wherein the sequence is codon optimized for said micro-organism, for inducing autophagy; introducing the vector containing the gene into the genome of the micro-organism to yield a genetically modified micro-organism; and growing the genetically modified micro-organism in suitable medium. According to another embodiment of the invention there is provided a method of increasing biomass and lipid content in a micro-organism exposed to stress, comprising treating the microorganism with an autophagy inducing agent.

First claim

1 . A method of increasing biomass and lipid content in a micro-organism exposed to stress comprising:
a. cloning in a vector an exogenous gene sequence selected from the group comprising Atg1 gene, Atg6 gene, and Atg8 gene sequence wherein the sequence is at least 50% homologous with Atg1 gene, Atg6 gene, and Atg8 gene, codon optimized for said micro-organism, for inducing autophagy; b. introducing the vector containing the gene into the genome of the micro-organism to yield a genetically modified micro-organism; and c. growing the genetically modified micro-organism in suitable medium.

2 . The method as claimed in claim 1 wherein, the genetically modified micro-organism is exposed to abiotic stresses comprisinq ultraviolet radiation (UV), salinity, light, unfavourable temperature, alkalinity, nutrient limitation, oxidative stress, senescence, sulfur deficiency, carbon deficiency, nitrogen use inefficiency, or stress due to biotic reasons comprising virus, bacteria, fungus or other stress causing pathogens.

3 . The method as claimed in claim 1 wherein, the vector is pChlamy_1.

4 . The method as claimed in claim 1 wherein, the exogenous gene has at least 52% homology with Atg1 gene of yeast.

5 . The method as claimed in claim 4 wherein, the exogenous gene having at least 52% homology with Atg1 gene of yeast is obtained from Chlorella.

6 . A method of increasing biomass and lipid content in a micro-organism exposed to stress, comprising treating the micro-organism with an autophagy inducing agent.

7 . The method as claimed in claim 6 wherein, the stress is abiotic stresses comprising ultraviolet radiation (UV), salinity, light, unfavourable temperature, alkalinity, nutrient limitation, oxidative stress, senescence, sulfur deficiency, carbon deficiency, nitrogen use inefficiency, or stress due to biotic reasons comprising virus, bacteria, fungus or other stress causing pathogens.

8 . The method as claimed in claim 6 wherein, the UV exposure is not more than 6 hours.

9 . The method as claimed in claim 6 wherein, the autophagy inducing agent is z-vad-fmk when the stress is UV.

10 . The method as claimed in claim 6 wherein, the micro-organism is treated with 1 mM to 1M of z-vad-fmk for 1 minute to 5 days.

11 . The method as claimed in claim 6 wherein, the micro-organism is kept in the dark for 24 hours after UV exposure followed by exposure to light.

12 . The method as claimed in claim 6 wherein, salinity exposure is not more than 10 days.

13 . The method as claimed in claim 6 wherein, the autophagy inducing agent is LiCl when the stress is salinity.

14 . A genetically modified micro-organism exhibiting enhanced autophagy, the micro-organism comprising a vector carrying an exogenous gene sequence selected from the group comprising Atg1 gene, Atg6 gene, and Atg8 gene sequence wherein the sequence is at least 50% homologous with Atg1 gene, Atg6 gene, and Atg8 gene codon optimized for algae, known to induce autophagy.

15 . The micro-organism as claimed in claim 14 wherein, the vector is pChlamy_1.

16 . The micro-organism as claimed in claim 14 wherein, the exogenous gene has at least 52% homology with Atg1 gene of yeast.

17 . The micro-organism as claimed in claim 14 wherein, the exogenous gene having at least 52% homology with Atg1 gene of yeast is obtained from Chlorella.

18 . A genetically modified eukaryotic micro-organism exhibiting enhanced autophagy comprising a nucleic acid sequence of SEQ ID No. 1.

19 . A genetically modified micro-organism exhibiting enhanced autophagy comprising a nucleic acid sequence coding a protein kinase domain of SEQ ID No. 2.

20 . The genetically modified micro-organism as claimed in claim 18 is a photosynthetic micro-organism.

21 . A nucleic acid sequence comprising SEQ ID No. 1.

22 . A nucleic acid sequence encoding a polypeptide comprising an amino acid sequence of SEQ ID No. 2

23 . A polypeptide comprising an amino acid sequence of SEQ ID No. 2

24 . A vector comprising a regulatory nucleic acid segment operably coupled to a nucleic acid sequence of SEQ ID No. 1.

25 . A vector comprising a regulatory nucleic acid segment operably coupled to a nucleic acid sequence encoding a polypeptide comprising an amino acid sequence of SEQ ID No. 2.

Assignees

• Reliance Ind Ltd

Inventors

• Das Gautam
• Dasgupta Santanu
• Kumar Raja
• Prasad Venkatesh
• Deepak Nanjappa
• Soni Niraja
• Date Amol
• Soni Badrish Ranjitlal
• Nagarjuna Pasupuleti

Classifications

• C07K14/405

  from algae · CPC title

• C12N1/12

  Unicellular algae; Culture media therefor (as new plants A01H13/00) · CPC title

• C12N15/8247

  involving modified lipid metabolism, e.g. seed oil composition · CPC title

• C12P7/64 Primary

  Fats; Fatty oils; Ester-type waxes; Higher fatty acids, i.e. having at least seven carbon atoms in an unbroken chain bound to a carboxyl group; Oxidised oils or fats · CPC title

• C12N15/79

  Vectors or expression systems specially adapted for eukaryotic hosts · CPC title