Dna detection method and dna detection device

Patent metadata

Field	Value
Publication number	US-2016257992-A1
Application number	US-201615047615-A
Country	US
Kind code	A1
Filing date	Feb 18, 2016
Priority date	Mar 4, 2015
Publication date	Sep 8, 2016
Grant date	—

Abstract

Disclosed is a DNA detection device that detects a target DNA by detecting fluorescence output from sample droplets flowing through a flow path in a surface of a sensor chip, and that includes a fluorescence detector that detects fluorescence output from sample droplets flowing through the flow path, and a DNA detector that determines a type of fluorescent probe solution contained in each of the sample droplets based on a duration of the detected fluorescence and determines whether or not the sample droplet contains the target DNA based on whether intensity of the fluorescence is higher or lower than a threshold value.

First claim

What is claimed is:

1 . A DNA detection method comprising:
(a) placing a sensor chip in a DNA detection device, wherein the DNA detection device comprises: a PCR processor, a fluorescence detector, and a DNA detector, the sensor chip comprises: a first flow path, a second flow path, a third flow path, a fourth flow path, a fifth flow path, a sixth flow path, a seventh flow path, an eighth flow path, and a ninth flow path, a first end of the first flow path and a first end of the second flow path are connected to a first end of the third flow path, a second end of the third flow path is connected to a first end of the sixth flow path, the fourth flow path and the fifth flow path are connected between the first end and the second end of the third flow path, a second end of the sixth flow path and a first end of the seventh flow path are connected to a first end of the eighth flow path, a second end of the eighth flow path is connected to the PCR processor, and the PCR processor is connected to the ninth flow path; (b) introducing an aqueous DNA solution and an aqueous DNA polymerase solution into the first flow path and the second flow path, respectively, to pass a first aqueous mixture of the aqueous DNA solution and the aqueous DNA polymerase solution through the third flow path, wherein the aqueous DNA solution contains a target single-stranded DNA; (c) introducing a first aqueous fluorescent probe solution obtained by mixing a first fluorescent probe with a first primer into the fourth flow path at a first flow rate during flowing of the first aqueous mixture through the third flow path to pass a second aqueous mixture of the first aqueous mixture and the first aqueous fluorescent probe solution through the sixth flow path, wherein the first fluorescent probe complementarily binds to a first single-stranded DNA; (d) introducing an oil material into the seventh flow path at a second flow rate to pass parts of the second aqueous mixture and parts of the oil material through the eighth flow path, wherein the parts of the second aqueous mixture and the parts of the oil material are arranged alternately along the eighth flow path; (e) introducing a second aqueous fluorescent probe solution obtained by mixing a second fluorescent probe with a second primer into the fifth flow path at a third flow rate during flowing of the first aqueous mixture through the third flow path to flow a third aqueous mixture of the first aqueous mixture and the second aqueous fluorescent probe solution through the sixth flow path, wherein the second fluorescent probe is different from the first fluorescent probe and complementarily binds to a second single-stranded DNA; (f) introducing the oil material into the seventh flow path at a fourth flow rate to pass parts of the third aqueous mixture and parts of the oil material through the eighth flow path, wherein the parts of the third aqueous mixture and the parts of the oil material are arranged alternately along the eighth flow path; (g) processing the parts of the second aqueous mixture and the parts of the third aqueous mixture by PCR with the PCR processor and then passing the parts through the ninth flow path; (h) detecting, with the fluorescence detector, intensity of fluorescence output from each of the parts of the second aqueous mixture and the parts of the third aqueous mixture flowing through the ninth flow path; and (i) detecting, with the DNA detector, whether or not the target single-stranded DNA contains at least one selected from the first single-stranded DNA and the second single-stranded DNA based on the intensity of transmitted light, the first flow rate, the second flow rate, the third flow rate, and the fourth flow rate.

2 . The DNA detection method according to claim 1 , wherein in the step (i), the DNA detector
acquires a duration for which the fluorescence detector continuously detects intensity of light equal to or higher than a first threshold value, and detects whether or not the target single-stranded DNA contained in the aqueous DNA solution contains the first single-stranded DNA or the second single-stranded DNA based on whether or not the duration is a time correlating to the first flow rate and the second flow rate or a time correlating to the third flow rate and the fourth flow rate.

3 . The DNA detection method according to claim 2 , wherein
when the duration is the time correlating to the first flow rate and the second flow rate, the DNA detector determines that the target single-stranded DNA contains the first single-stranded DNA, and when the duration is the time correlating to the third flow rate and the fourth flow rate, the DNA detector determines that the target single-stranded DNA contains the second single-stranded DNA.

4 . The DNA detection method according to claim 3 , wherein the time correlating to the first flow rate and the second flow rate correlates to a flow rate of the parts of the second aqueous mixture in the ninth flow path, and the time correlating to the third flow rate and the fourth flow rate correlates to a flow rate of the parts of the third aqueous mixture in the ninth flow path.

5 . The DNA detection method according to claim 1 , wherein when the second flow rate and the fourth flow rate are the same and the first flow rate is different from the third flow rate, a flow rate ratio between the second aqueous mixture and the third aqueous mixture varies depending on a flow rate ratio between the first aqueous fluorescent probe solution and the second aqueous fluorescent probe solution.

6 . The DNA detection method according to claim 5 , wherein the first flow rate is different from the third flow rate due to a difference in cross-sectional area between the fourth flow path and the fifth flow path.

7 . The DNA detection method according to claim 1 , wherein the second flow rate and the fourth flow rate are different from each other.

8 . The DNA detection method according to claim 1 , wherein a fluorescent dye contained in the first aqueous fluorescent probe solution and a fluorescent dye contained in the second aqueous fluorescent probe solution emit fluorescence of a same wavelength.

9 . The DNA detection method according to claim 1 , wherein an average of volumes of the parts of the second aqueous mixture and an average of volumes of the parts of the third aqueous mixture are different by 25% or more.

10 . A DNA detection device that detects a DNA based on fluorescence output from parts of an aqueous DNA mixture flowing through a flow path in a surface of a sensor chip, wherein
the aqueous DNA mixture is an aqueous solution obtained by mixing a DNA mixture with a first aqueous fluorescent probe solution or a second aqueous fluorescent probe solution, the DNA mixture is an aqueous solution obtained by mixing a DNA solution containing a target single-stranded DNA with a DNA polymerase, the first aqueous fluorescent probe solution is an aqueous solution obtained by mixing a fluorescent probe with a primer that complementarily bind to a first single-stranded DNA, the second aqueous fluorescent probe solution is an aqueous solution obtained by mixing a fluorescent probe with a primer that complementarily bind to a second single-stranded DNA, and the device comprises:
a fluorescence detector that detects intensity of fluorescence output from parts of the aqueous DNA mixture flowing through the flow path: and
a DNA detector that determines a type of fluorescent probe solution contained in each of the parts of the aqueous DNA mixture based on a duration of the fluorescence and detects whether or not the target single-stranded DNA contains at least one selected from the first single-stranded DNA

Assignees

• Panasonic Ip Man Co Ltd

Inventors

• Tsukuda Masahiko

Classifications

• C12Q1/686 Primary

  Polymerase chain reaction [PCR] · CPC title