Production of Polypeptides Without Secretion Signal in Bacillus

Patent metadata

Field	Value
Publication number	US-2016122772-A1
Application number	US-201414896423-A
Country	US
Kind code	A1
Filing date	Jun 23, 2014
Priority date	Jun 21, 2013
Publication date	May 5, 2016
Grant date	—

Abstract

The present invention relates to a method of producing a natively non-secreted polypeptide without a secretion signal in a Bacillus host cell and recovering the polypeptide without performing a lysis step as well as to a Bacillus host cell comprising one or more exogenous or heterologous polynucleotides encoding a natively non-secreted polypeptide with no secretion signal.

First claim

1 . A method of producing a natively non-secreted polypeptide in a Bacillus host cell, said method comprising the steps of:
(a) cultivating a Bacillus host cell comprising one or more exogenous or heterologous polynucleotides encoding the natively non-secreted polypeptide with no secretion signal in a growth medium under conditions conducive to express the natively non-secreted polypeptide; and (b) recovering the natively non-secreted polypeptide without performing a cell-lysis step.

2 . A method of producing a polypeptide, comprising the steps of:
(a) cultivating a Bacillus host cell comprising one or more polynucleotides encoding the polypeptide under conditions conducive for production of the polypeptide, wherein the polypeptide is produced intracellulary by its native, wild-type source and wherein the one or more polynucleotides are not operably linked to a signal peptide coding sequence; and (b) recovering the polypeptide without performing a cell-lysis step.

3 . The method of claim 1 or 2 , wherein the Bacillus host cell is selected from the group consisting of Bacillus alkalophilus, Bacillus amyloliquefaciens, Bacillus brevis, Bacillus circulans, Bacillus clausii, Bacillus coagulans, Bacillus firmus, Bacillus lautus, Bacillus lentus, Bacillus licheniformis, Bacillus megaterium, Bacillus pumilus, Bacillus stearothermophilus, Bacillus subtilis , and Bacillus thuringiensis , preferably Bacillus licheniformis or Bacillus subtilis.

4 . The method of claim 1 , wherein the polypeptide is native to the Bacillus host cell.

5 . The method of claim 1 , wherein the polypeptide is heterologous to the Bacillus host cell.

6 . The method of claim 1 , wherein the polypeptide is derived from a thermophilic organism.

7 . The method of claim 1 , wherein the polypeptide is derived from a hypothermophilic organism.

8 . The method of claim 6 , wherein the thermophilic or hypothermophilic organism is selected from the group consisting of Aeropylum, Aquifex, Archaeoglubus, Dictyoglomus, Geothermobacterium, Methanopyrus, Pyrococcus, Pyrolobus, Sulpholobus, Thermotoga , and Thermus.

9 . The method of claim 1 , wherein the polypeptide is resistant to degradation by one or more endogenous proteases produced by the Bacillus host cell in the fermentation broth.

10 . The method of claim 1 , wherein the polypeptide is an enzyme; preferably the enzyme is a hydrolase, isomerase, ligase, lyase, oxidoreductase, or transferase.

11 . The method of claim 10 , wherein the enzyme is a glucanotransferase comprising an amino acid sequence that is at least 70% identical to SEQ ID NO:1 or a variant of the green fluorescent protein from the marine jellyfish Aequorea victoria comprising an amino acid sequence that is at least 70% identical to SEQ ID NO:2 or an asparaginase comprising an amino acid sequence that is at least 70% identical to SEQ ID NO:3.

12 . The method of claim 1 , wherein each of said one or more polynucleotides are operably linked with at least one promoter to enable its expression.

13 . The method of claim 1 , wherein the one or more polynucleotides are integrated into at least one chromosomal locus of the Bacillus host cell; preferably into several loci.

14 . The method of claim 1 , wherein the polypeptide is recovered by collection, centrifugation, filtration, extraction, spray-drying, evaporation, or precipitation.

15 . The method of claim 1 , wherein the polypeptide is recovered in the fermentation broth.

16 . The method of claim 1 , wherein the Bacillus host cell comprises a disruption of one or more nucleic acid sequences encoding one or more proteases that results in the production of less protease.

17 . The method of claim 16 , wherein the one or more proteases are selected from the group consisting of AprE (alkaline protease), Bpr (bacillopeptidase F), Epr (minor extracellular serine protease), Mpr (metalloprotease), NprE (extracellular neutral protease B), Vpr (minor extracellular serine protease), and WprA (secreted quality control protease).

18 . The method of claim 1 , wherein the amount of polypeptide produced is at least 1 g/l of fermentation broth.

19 . A recombinant Bacillus host cell comprising one or more exogenous or heterologous polynucleotide encoding a natively non-secreted polypeptide with no secretion signal.

20 . (canceled)

Assignees

• Novozymes As
• Novozymes As

Inventors

• Banke Niels
• Rasmussen Michael Dolberg
• Pedersen Poul Erik
• Borchert Martin Simon

Classifications

• C12Y305/01001

  Asparaginase (3.5.1.1) · CPC title

• C12N15/75 Primary

  for Bacillus · CPC title

• C12N9/1051

  Hexosyltransferases (2.4.1) · CPC title

• C12Y204/01

  Hexosyltransferases (2.4.1) · CPC title

• C12N9/82

  Asparaginase {(3.5.1.1)} · CPC title