Method and system for sampling material from cells

Patent metadata

Field	Value
Publication number	US-12460248-B2
Application number	US-202318149143-A
Country	US
Kind code	B2
Filing date	Jan 2, 2023
Priority date	Nov 26, 2019
Publication date	Nov 4, 2025
Grant date	Nov 4, 2025

Abstract

Methods, systems, and devices for sampling/isolating material from cells. An exemplary system may comprise a chip including an electrode array of sampling electrodes arranged along a surface of the chip. A cell-receiving area may be located adjacent the surface of the chip. The system also may comprise a tag array of tags supported by the chip and aligned with the electrode array. Each tag of the tag array may include an identifier that is unique to the tag within the tag array. Each tag may be configured to bind nucleic acids, or a capturing agent distinct from the tag may be aligned with each sampling electrode of the electrode array to capture a protein or other analyte of interest. The system further may comprise a control circuit configured to apply an individually controllable voltage to each sampling electrode of the electrode array and measure an electrical property of the sampling electrode.

First claim

We claim:

1 . A method of sampling nucleic acid material from tissue, the method comprising:
receiving a tissue section on a surface of a chip, wherein the chip includes an electrode array of sampling electrodes arranged along the surface, wherein a well array of wells is formed in the surface of the chip, wherein each sampling electrode of the electrode array is located at the bottom of a different well of the well array, and wherein each tag of the tag array is located in one of the wells of the well array; measuring an electrical property for each sampling electrode of the electrode array; applying an individually controllable lysis voltage to the sampling electrode if the measured electrical property for the sampling electrode meets one or more predefined criteria; and applying an electrophoresis voltage to the sampling electrode, if the individually controllable lysis voltage was applied to the sampling electrode, to drive nucleic acids, if any, that were released from one of the cells of the tissue section by applying the lysis voltage, to copies of a tag of the tag array that is aligned with the sampling electrode.

2 . The method of claim 1 , wherein each tag includes an identifier that is unique within the tag array.

3 . The method of claim 2 , wherein the tag is configured to hybridize with RNA molecules of the nucleic acids, to capture the RNA molecules.

4 . The method of claim 1 , further comprising receiving an electrolyte gel on the tissue section.

5 . The method of claim 1 , further comprising capturing nucleic acids with a capturing agent over each sampling electrode of a plurality of sampling electrodes of the electrode array, wherein capturing nucleic acids includes capturing RNA molecules of the nucleic acids by hybridization with the capturing agent.

6 . The method of claim 1 , wherein a tag array is aligned with the electrode array, wherein the tag array is composed of tags, wherein each tag has an identifier that is unique within the tag array, and wherein applying an electrophoresis voltage includes driving nucleic acids from the one cell, if any, that was lysed by the lysis potential, to a tag of the tag array that is aligned with the one cell.

7 . The method of claim 1 , further comprising outputting data representing a percentage, number, and/or map of sampling electrodes of the electrode array at which capture of nucleic acids from lysed cells is predicted to have occurred.

8 . A method of sampling nucleic acid material from cells, the method comprising:
receiving a tissue section on a surface of a chip, the chip including an electrode array of sampling electrodes arranged along the surface, wherein a well array of wells is formed in the surface of the chip, wherein each sampling electrode of the electrode array is located at the bottom of a different well of the well array, and wherein each copy of a capturing agent is located in one of the wells of the well array; measuring an electrical property for each sampling electrode of the electrode array; applying an individually controllable lysis voltage to the sampling electrode if the measured electrical property for the sampling electrode meets one or more predefined criteria; and applying an electrophoresis voltage to the sampling electrode to drive nucleic acids, if any, that were released from a cell of the tissue section by the lysis voltage, to copies of the capturing agent for the nucleic acids.

Assignees

• Bio Rad Laboratories Inc

Inventors

• Bibillo Arkadiusz
• Patel Pranav
• Reggiardo Christopher
• Petersen Jonathan

Classifications

• C12Q1/6874

  involving nucleic acid arrays, e.g. sequencing by hybridisation · CPC title

• C12Q1/6853

  using modified primers or templates · CPC title

• C12N15/1003

  Extracting or separating nucleic acids from biological samples, e.g. pure separation or isolation methods; Conditions, buffers or apparatuses therefor · CPC title

• C12Q1/6806 Primary

  Preparing nucleic acids for analysis, e.g. for polymerase chain reaction [PCR] assay (C12Q1/6804 takes precedence) · CPC title

• C12Q1/6825

  Nucleic acid detection involving sensors · CPC title