Antibodies and methods for the diagnosis and treatment of Epstein Barr virus infection

Patent metadata

Field	Value
Publication number	US-12410240-B2
Application number	US-202418440344-A
Country	US
Kind code	B2
Filing date	Feb 13, 2024
Priority date	Apr 25, 2017
Publication date	Sep 9, 2025
Grant date	Sep 9, 2025

Abstract

Antibodies and compositions of matter useful for the detection, diagnosis and treatment of Epstein Barr Virus (EBV) infection in mammals, and methods of using those compositions of matter for the detection, diagnosis and treatment of EBV infection are described. Also described are proteins, referred to as anti-gp350 antibody probes, and anti-gp350 B-cell probes, that maintain the epitope structure of the CR2-binding region of gp350, but do not bind CR2.

First claim

The invention claimed is:

1. An isolated antibody that binds Epstein Barr Virus (EBV) gp350 protein, comprising a variable heavy (VH) domain and a variable light (VL) domain, wherein:
(a) the VH domain comprises the complementarity determining region 1 (CDR1), CDR2 and CDR3 sequences of SEQ ID NO: 1, and the VL domain comprises the CDR1, CDR2 and CDR3 sequences of SEQ ID NO: 6;
(b) the VH domain comprises the CDR1, CDR2 and CDR3 sequences of SEQ ID NO: 11, and the VL domain comprises the CDR1, CDR2 and CDR3 sequences of SEQ ID NO:
(c) the VH domain comprises the CDR1, CDR2 and CDR3 sequences of SEQ ID NO: 21, and the VL domain comprises the CDR1, CDR2 and CDR3 sequences of SEQ ID NO: 26;
(d) the VH domain comprises the CDR1, CDR2 and CDR3 sequences of SEQ ID NO: 31, and the VL domain comprises the CDR1, CDR2 and CDR3 sequences of SEQ ID NO: 36;
(e) the VH domain comprises the CDR1, CDR2 and CDR3 sequences of SEQ ID NO: 41, and the VL domain comprises the CDR1, CDR2 and CDR3 sequences of SEQ ID NO: 46;
(f) the VH domain comprises the CDR1, CDR2 and CDR3 sequences of SEQ ID NO: 161, and the VL domain comprises the CDR1, CDR2 and CDR3 sequences of SEQ ID NO: 166, wherein the antibody is an engineered antibody;
(g) the VH domain comprises the CDR1, CDR2 and CDR3 sequences of SEQ ID NO: 171, and the VL domain comprises the CDR1, CDR2 and CDR3 sequences of SEQ ID NO: 176, wherein the antibody is an engineered antibody;
(h) the VH domain comprises the CDR1, CDR2 and CDR3 sequences of SEQ ID NO: 181, the VL domain comprises the CDR1, CDR2 and CDR3 sequences of SEQ ID NO: 186, wherein the antibody is an engineered antibody;
(i) the VH domain comprises the CDR1, CDR2 and CDR3 sequences of SEQ ID NO: 191, and the VL domain comprises the CDR1, CDR2 and CDR3 sequences of SEQ ID NO: 196, wherein the antibody is an engineered antibody;
(j) the VH domain comprises the CDR1, CDR2 and CDR3 sequences of SEQ ID NO: 201, and the VL domain comprises the CDR1, CDR2 and CDR3 sequences of SEQ ID NO: 206, wherein the antibody is an engineered antibody;
(k) the VH domain comprises the CDR1, CDR2 and CDR3 sequences of SEQ ID NO: 211, and the VL domain comprises the CDR1, CDR2 and CDR3 sequences of SEQ ID NO: 216, wherein the antibody is an engineered antibody;
(l) the VH domain comprises the CDR1, CDR2 and CDR3 sequences of SEQ ID NO: 221, and the VL domain comprises the CDR1, CDR2 and CDR3 sequences of SEQ ID NO: 226, wherein the antibody is an engineered antibody;
(m) the VH domain comprises the CDR1, CDR2 and CDR3 sequences of SEQ ID NO: 231, and the VL domain comprises the CDR1, CDR2 and CDR3 sequences of SEQ ID NO: 236, wherein the antibody is an engineered antibody;
(n) the VH domain comprises the CDR1, CDR2 and CDR3 sequences of SEQ ID NO: 241, and the VL domain comprises the CDR1, CDR2 and CDR3 sequences of SEQ ID NO: 246, wherein the antibody is an engineered antibody;
(o) the VH domain comprises the CDR1, CDR2 and CDR3 sequences of SEQ ID NO: 251, and the VH domain comprises the CDR1, CDR2 and CDR3 sequences of SEQ ID NO: 256, wherein the antibody is an engineered antibody;
(p) the VH domain comprises the CDR1, CDR2 and CDR3 sequences of SEQ ID NO: 261, and the VL domain comprises the CDR1, CDR2 and CDR3 sequences of SEQ ID NO: 266, wherein the antibody is an engineered antibody;
(q) the VH domain comprises the CDR1, CDR2 and CDR3 sequences of SEQ ID NO: 271, and the VL domain comprises the CDR1, CDR2 and CDR3 sequences of SEQ ID NO: 276, wherein the antibody is an engineered antibody; or
(r) the VH domain comprises the CDR1, CDR2 and CDR3 sequences of SEQ ID NO: 281, and the VL domain comprises the CDR1, CDR2 and CDR3 sequences of SEQ ID NO: 286, wherein the antibody is an engineered antibody.

2. The antibody of claim 1 , which is conjugated to a solid support selected from a support formed partially or entirely of glass, a polysaccharide, a polyacrylamide, a polystyrene, a polyvinyl alcohol, a silicone, an assay plate, and a purification column.

3. A composition comprising the antibody of claim 1 and a carrier.

4. The composition of claim 3 , wherein the carrier comprises a pharmaceutically acceptable carrier.

5. An article of manufacture comprising a container and the composition of claim 4 contained within the container.

6. The article of manufacture of claim 5 , further comprising a label affixed to the container, or a package insert included with the container, referring to the use of the composition of matter for the therapeutic treatment of or the diagnostic detection of an EBV infection.

7. An expression vector comprising a nucleic acid molecule encoding the antibody of claim 1 , operably linked to a promoter.

8. An isolated host cell comprising the expression vector of claim 7 .

9. The isolated host cell of claim 8 , which is a mammalian cell, a bacterial cell, or a yeast cell.

10. A process for producing an antibody, comprising culturing the host cell of claim 8 under conditions suitable for expression of the antibody and recovering the antibody from the cell culture.

11. A method of determining the presence of an EBV gp350 protein in a sample suspected of containing the protein, comprising exposing the sample to the antibody of claim 1 and detecting binding of the antibody to a protein in the sample, wherein binding of the antibody to a protein is indicative of the presence of EBV gp350 protein in the sample.

12. The method of claim 11 , wherein the antibody is detectably labeled.

13. The method of claim 12 , wherein the label is selected from a radioisotope and a fluorescent label.

14. The method of claim 11 , wherein the antibody is conjugated to a solid support selected from a support formed partially or entirely of glass, a polysaccharide, a polyacrylamide, a polystyrene, a polyvinyl alcohol, a silicone, an assay plate, and a purification column.

15. The method of claim 11 , wherein the sample comprises a cell suspected of containing an EBV gp350 protein, and the cell is an EBV-infected cell, an epithelial cell, a B lymphocyte, an oropharyngeal cell, a nasopharyngeal cell, or a cancer cell.

16. A method of diagnosing and treating the presence of an EBV infection in a mammal, comprising determining the level of expression of a gene encoding an EBV gp350 protein in a test sample of tissue cells obtained from the mammal and in a control sample of known normal cells of the same tissue origin, wherein a higher level of expression of the EBV gp350 protein in the test sample, as compared to the control sample, is indicative of the presence of an EBV infection in the mammal from which the test sample was obtained, and wherein the mammal determined to have the presence of the EBV infection is administered a therapeutically effective amount of the antibody of claim 1 .

Assignees

• Us Health
• Henry M Jackson Found Advancement Military Medicine Inc
• Us Health

Inventors

• Bu Wei
• Kanekiyo Masaru
• Joyce Michael Gordon
• Cohen Jeffrey I

Classifications

• C07K2317/565

  Complementarity determining region [CDR] · CPC title

• C07K2317/21

  from primates, e.g. man · CPC title

• C07K2317/10

  characterized by their source of isolation or production · CPC title

• C07K14/05

  Epstein-Barr virus · CPC title

• A61K38/00

  Medicinal preparations containing peptides (peptides containing beta-lactam rings A61K31/00; cyclic dipeptides not having in their molecule any other peptide link than those which form their ring, e.g. piperazine-2,5-diones, A61K31/00; ergot alkaloids of the cyclic peptide type A61K31/48; containing macromolecular compounds having statistically distributed amino acid units A61K31/74; medicinal preparations containing antigens or antibodies A61K39/00; medicinal preparations characterised by the non-active ingredients, e.g. peptides as drug carriers, A61K47/00) · CPC title