Antifungal Paenibacillus strains, fusaricidin-type compounds, and their use

Patent metadata

Field	Value
Publication number	US-12258554-B2
Application number	US-202117378845-A
Country	US
Kind code	B2
Filing date	Jul 19, 2021
Priority date	Aug 4, 2014
Publication date	Mar 25, 2025
Grant date	Mar 25, 2025

Abstract

The present invention relates to novel isolated bacterial strains, which are members of the genus Paenibacillus , originally isolated from soil and showing antagonistic activity against a broad range of pathogens and being capable of producing antimicrobial metabolites. It was found that the strains Lu16774 and Lu17007 belong to a novel subspecies named Paenibacillus polymyxa ssp. plantarum while the strain Lu17015 belongs to a novel species which is proposed to be Paenibacillus epiphyticus . The present invention also relates to microbial pesticide compositions comprising at least one of such novel bacterial strains, whole culture broth or a cell-free extract or a fraction thereof or at least one metabolite thereof, and/or a mutant of at least one of said novel bacterial strains having all the identifying characteristics of the respective bacterial strain or whole culture broth, cell-free extract, fraction and/or metabolite of the mutant thereof showing antagonistic activity against plant pathogens. The present invention also relates to a method of controlling or suppressing plant pathogens or preventing plant pathogen infections by applying such composition. The present invention also relates to novel fusaricidin-type compounds which are metabolites produced by the strains of the present invention.

First claim

The invention claimed is:

1. An agrochemical composition comprising:
(1) a compound of formula I

wherein
R is selected from 15-guanidino-3-hydroxypentadecanoic acid (GHPD) and 12-guanidinododecanoic acid (12-GDA);
X 1 is threonine;
X 2 is isoleucine;
X 3 is tyrosine;
X 4 is threonine;
X 5 is selected from glutamine and asparagine;
X 6 is alanine; and
wherein an arrow defines a single (amide) bond either between the carbonyl moiety of R and the amino group of the amino acid X 1 or between the carbonyl group of one amino acid and the amino group of a neighboring amino acid,
wherein the tip of the arrow indicates the attachment to the amino group of said amino acid X 1 or of said neighboring amino acid; and

wherein the single line (without an arrow head) defines a single (ester) bond between the carbonyl group of X 6 and the hydroxyl group of X 1 ;
or an agriculturally acceptable salt thereof; and
(2) at least one auxiliary selected from the group consisting of buffers, surfactants, dispersants, emulsifiers, wetters, adjuvants, solubilizers, penetration enhancers, protective colloids, adhesion agents, thickeners, humectants, repellents, attractants, feeding stimulants, compatibilizers, bactericides, anti-freezing agents, anti-foaming agents, colorants, tackifiers, and binders.

2. The agrochemical compound of claim 1 , wherein the compound of formula I is selected from compounds 1A and 1B:

or an agriculturally acceptable salt thereof.

3. A method of preparing a compound a compound of formula I

wherein
R is selected from 15-guanidino-3-hydroxypentadecanoic acid (GHPD) and 12-guanidinododecanoic acid (12-GDA);
X 1 is threonine;
X 2 is isoleucine;
X 3 is tyrosine;
X 4 is threonine;
X 5 is selected from glutamine and asparagine;
X 6 is alanine; and
wherein an arrow defines a single (amide) bond either between the carbonyl moiety of R and the amino group of the amino acid X 1 or between the carbonyl group of one amino acid and the amino group of a neighboring amino acid,
wherein the tip of the arrow indicates the attachment to the amino group of said amino acid X 1 or of said neighboring amino acid; and

wherein the single line (without an arrow head) defines a single (ester) bond between the carbonyl group of X 6 and the hydroxyl group of X 1 ;
or an agriculturally acceptable salt thereof, the method comprising:

culturing a Paenibacillus strain and recovering said compound or salt thereof from the whole culture broth.

4. The method of claim 3 , wherein the Paenibacillus strain is selected from the group consisting of:
a) strain Lu16774 deposited with DSMZ under Accession No. DSM 26969;
b) strain Lu17007 deposited with DSMZ under Accession No. DSM 26970;
c) strain Lu17015 deposited with DSMZ under Accession No. DSM 26971; and
d) a strain which comprises a DNA sequence exhibiting
d1) at least 99.6% nucleotide sequence identity to the DNA sequences SEQ ID NO: 4 or SEQ ID NO:9; or
d2) at least 99.8% nucleotide sequence identity to the DNA sequence SEQ ID NO: 14; or
d3) at least 99.9% nucleotide sequence identity to the DNA sequences SEQ ID NO: 5 or SEQ ID NO:10; or
d4) at least 99.2% nucleotide sequence identity to the DNA sequence SEQ ID NO: 15; or
d5) at least 99.2% nucleotide sequence identity to the DNA sequences SEQ ID NO: 6 or SEQ ID NO:11; or
d6) at least 99.8% nucleotide sequence identity to the DNA sequence SEQ ID NO: 16; or
d7) at least 99.8% nucleotide sequence identity to the DNA sequences SEQ ID NO: 7 or SEQ ID NO:12; or
d8) at least 99.3% nucleotide sequence identity to the DNA sequence SEQ ID NO: 17; or
d9) 100.0% nucleotide sequence identity to the DNA sequences SEQ ID NO:8 or SEQ ID NO:13; or
d10) 100% nucleotide sequence identity to the DNA sequence SEQ ID NO:18.

Assignees

• Basf Se

Inventors

• Siepe Isabella
• Brueser Heilke
• Klappach Kristin
• Schneider Karl-Heinrich
• Sproete Petra
• Hage Kerstin
• Blanz Birgit
• Thines Eckhard
• Antelo Luis
• Sandjo Louis Pergaud
• Opatz Till

Classifications

• C07K14/195

  from bacteria · CPC title

• A01N63/10

  Animals; Substances produced thereby or obtained therefrom · CPC title

• A01N63/25 Primary

  Paenibacillus · CPC title

• C12N1/205

  Bacterial isolates · CPC title

• C12R2001/01

  Bacteria or Actinomycetales {; using bacteria or Actinomycetales} · CPC title