Polypeptides comprising immunoglobulin single variable domains targeting glypican-3 and T cell receptor

Patent metadata

Field	Value
Publication number	US-11932702-B2
Application number	US-202117553908-A
Country	US
Kind code	B2
Filing date	Dec 17, 2021
Priority date	Dec 18, 2020
Publication date	Mar 19, 2024
Grant date	Mar 19, 2024

Abstract

The present technology aims at providing a novel type of drug for treating a subject suffering from cancer. Specifically, the technology provides polypeptides comprising at least four immunoglobulin single variable domains (ISVDs), characterized in that one ISVD binds to TCR and at least two ISVDs bind to GPC3. The present technology also provides nucleic acids, vectors and compositions.

First claim

The invention claimed is:

1. A polypeptide that comprises at least three immunoglobulin single variable domains (ISVDs), wherein each of said ISVDs comprises three complementarity determining regions (CDRs), CDR1 to CDR3, respectively, and wherein:
a) a first ISVD specifically binds to the constant domain of a T cell receptor (TCR) on a T cell and comprises:
i. a CDR1 comprising the amino acid sequence of SEQ ID NO: 6;
ii. a CDR2 comprising the amino acid sequence of SEQ ID NO: 10; and
iii. a CDR3 comprising the amino acid sequence of SEQ ID NO: 14;

b) a second ISVD specifically binds to Glypican-3 (GPC3) and comprises:
iv. a CDR1 comprising the amino acid sequence of SEQ ID NO: 7;
v. a CDR2 comprising the amino acid sequence of SEQ ID NO: 11; and
vi. a CDR3 comprising the amino acid sequence of SEQ ID NO: 15; and

c) a third ISVD specifically binds to GPC3 and comprises:
vii. a CDR1 comprising the amino acid sequence of SEQ ID NO: 8;
viii. a CDR2 comprising the amino acid sequence of SEQ ID NO: 12; and
ix. a CDR3 comprising the amino acid sequence of SEQ ID NO: 16,

wherein the order of the ISVDs indicates their relative position to each other considered from the N-terminus to the C-terminus of said polypeptide.

2. The polypeptide according to claim 1 , wherein the at least three ISVDs are linked via one or more peptidic linkers.

3. The polypeptide according to claim 1 , wherein the first ISVD is located at the N-terminus of said polypeptide.

4. The polypeptide according to claim 1 , wherein:
a) said first ISVD comprises a CDR1 consisting of the amino acid sequence of SEQ ID NO: 6, a CDR2 consisting of the amino acid sequence of SEQ ID NO: 10 and a CDR3 consisting of the amino acid sequence of SEQ ID NO: 14;
b) said second ISVD comprises a CDR1 consisting of the amino acid sequence of SEQ ID NO: 7, a CDR2 consisting of the amino acid sequence of SEQ ID NO: 11 and a CDR3 consisting of the amino acid sequence of SEQ ID NO: 15; and
c) said third ISVD comprises a CDR1 consisting of the amino acid sequence of SEQ ID NO: 8, a CDR2 consisting of the amino acid sequence of SEQ ID NO: 12 and a CDR3 consisting of the amino acid sequence of SEQ ID NO: 16.

5. The polypeptide according to claim 1 , wherein:
a) said first ISVD comprises the amino acid sequence of SEQ ID NO: 2;
b) said second ISVD comprises the amino acid sequence of SEQ ID NO: 3; and
c) said third ISVD comprises the amino acid sequence of SEQ ID NO: 4.

6. The polypeptide according to claim 1 , wherein:
a) said first ISVD consists of the amino acid sequence of SEQ ID NO: 2;
b) said second ISVD consists of the amino acid sequence of SEQ ID NO: 3; and
c) said third ISVD consists of the amino acid sequence of SEQ ID NO: 4.

7. The polypeptide according to claim 1 , wherein the first ISVD and the second ISVD are linked to each other via a linker consisting of less than 10 amino acids, a linker consisting of less than 6 amino acids, or a 5GS linker.

8. The polypeptide according to claim 1 , wherein said polypeptide further comprises one or more other groups, residues, moieties or binding units, in which said one or more other groups, residues, moieties or binding units provide the polypeptide with increased half-life, compared to the corresponding polypeptide without said one or more other groups, residues, moieties or binding units.

9. The polypeptide according to claim 8 , wherein the one or more other groups, residues, moieties or binding units are linked via one or more peptidic linkers.

10. The polypeptide according to claim 8 , in which said one or more other groups, residues, moieties or binding units that provide the polypeptide with increased half-life is chosen from the group consisting of a polyethylene glycol molecule, serum proteins or fragments thereof, binding units that can bind to serum proteins, an Fc portion, and small proteins or peptides that can bind to serum proteins.

11. The polypeptide according to claim 10 , wherein said one or more other groups, residues, moieties or binding units that provide the polypeptide with increased half-life comprise a binding unit that can bind to serum albumin or a serum immunoglobulin.

12. The polypeptide according to claim 10 , in which said one or more other groups, residues, moieties or binding units that provide the polypeptide with increased half-life comprise an ISVD that binds to human serum albumin.

13. The polypeptide according to claim 12 , wherein the ISVD binding to human serum albumin comprises a CDR1 consisting of the amino acid sequence of SEQ ID NO: 9, a CDR2 consisting of the amino acid sequence of SEQ ID NO: 13 and a CDR3 consisting of the amino acid sequence of SEQ ID NO: 17.

14. The polypeptide according to claim 12 , wherein said ISVD binding to human serum albumin consists of the amino acid sequence of SEQ ID NO: 5.

15. The polypeptide according to claim 1 , wherein the polypeptide comprises the amino acid sequence of SEQ ID NO: 1.

16. The polypeptide according to claim 1 , wherein the polypeptide consists of the amino acid sequence of SEQ ID NO: 1.

17. A polypeptide that comprises at least one immunoglobulin single variable domain (ISVD) that specifically binds Glypican-3 (GPC3), wherein said ISVD comprises three complementarity determining regions (CDRs, CDR1 to CDR3, respectively, and wherein the at least one ISVD comprises:
a) a CDR1 consisting of the amino acid sequence of SEQ ID NO: 7;
a CDR2 consisting of the amino acid sequence of SEQ ID NO: 11; and
a CDR3 consisting of the amino acid sequence of SEQ ID NO: 15; or

b) a CDR1 consisting of the amino acid sequence of SEQ ID NO: 8;
a CDR2 consisting of the amino acid sequence of SEQ ID NO: 12; and
a CDR3 consisting of the amino acid sequence of SEQ ID NO: 16.

18. A polypeptide that comprises at least two immunoglobulin single variable domains (ISVDs), wherein each of said ISVDs comprises three complementarity determining regions (CDRs), CDR1 to CDR3, respectively, and wherein:
a) each of a first and a second ISVD specifically binds to Glypican-3 (GPC3) and comprises:
i. a CDR1 consisting of the amino acid sequence of SEQ ID NO: 7;
ii. a CDR2 consisting of the amino acid sequence of SEQ ID NO: 11; and
iii. a CDR3 consisting of the amino acid sequence of SEQ ID NO: 15;

b) each of a first and a second ISVD specifically binds to GPC3 and comprises:
i. a CDR1 consisting of the amino acid sequence of SEQ ID NO: 8;
ii. a CDR2 consisting of the amino acid sequence of SEQ ID NO: 12; and
iii. a CDR3 consisting of the amino acid sequence of SEQ ID NO: 16;

c) a first ISVD specifically binds to GPC3 and comprises:
i. a CDR1 consisting of the amino acid sequence of SEQ ID NO: 7;
ii. a CDR2 consisting of the amino acid sequence of SEQ ID NO: 11; and
iii. a CDR3 consisting of the amino acid sequence of SEQ ID NO: 15; and

 a second ISVD specifically binds to GPC3 and comprises:
iv. a CDR1 consisting of the amino acid sequence of SEQ ID NO: 8;
v. a CDR2 consisting of the amino acid sequence of SEQ ID NO: 12; and
vi. a CDR3 consisting of the amino acid sequence of SEQ ID NO: 16;

d) a first ISVD specifically binds to GPC3 and comprises:
i. a CDR1 consisting of the amino acid sequence of SEQ ID NO: 8;
ii. a CDR2 consisting of the amino acid sequence of SEQ ID NO: 12; and
iii. a CDR3 consisting of the amino acid sequence of SEQ ID NO: 16; and

 a second ISVD specifically binds to GPC3 and comprises:
iv. a CDR1 consisting of the amino acid sequence of SEQ ID NO: 7;
v. a CDR2 consisting of the amino acid sequence of SEQ ID

Assignees

• Ablynx Nv
• Sanofi Sa

Inventors

• Janssen Daniel
• Boutton Carlo
• Dombrecht Evelyne
• Laukens Bram
• Meoni Paolo
• Pao Lily
• Pype Jan
• Schotte Peter
• Serruys Benedikte
• Vintem Ana Paula
• Van Hoorick Diane

Classifications

• C07K16/303 Primary

  Liver or Pancreas · CPC title

• A61P35/00

  Antineoplastic agents · CPC title

• C07K16/2809 Primary

  against the T-cell receptor (TcR)-CD3 complex · CPC title

• A61K2039/505

  comprising antibodies · CPC title

• C07K2317/31

  multispecific · CPC title