Recombinant cytomegalovirus vectors as vaccines for tuberculosis

Patent metadata

Field	Value
Publication number	US-11834669-B2
Application number	US-202117365509-A
Country	US
Kind code	B2
Filing date	Jul 1, 2021
Priority date	Jun 22, 2016
Publication date	Dec 5, 2023
Grant date	Dec 5, 2023

Abstract

Disclosed herein are cytomegalovirus vectors encoding fusion proteins comprising Mycobacterium tuberculosis (Mtb) antigens, nucleic acid molecules encoding the same, cytomegalovirus vectors comprising nucleic acid molecules, compositions comprising the same, and methods of eliciting an immune response against tuberculosis.

First claim

What is claimed is:

1. A recombinant rhesus cytomegalovirus (RhCMV) or human cytomegalovirus (HCMV) vector comprising a nucleic acid sequence encoding an expressible Mycobacterium tuberculosis (Mtb) antigen, wherein said Mtb antigen is a fusion protein comprising: a) a tripeptide consisting of the proteins Ag85A, Ag85B, and Rv3407, or fragments thereof, wherein the proteins, or fragments thereof, are joined in the order Ag85A-Ag85B-Rv3407 to form the tripeptide; or b) a dipeptide consisting of the proteins Ag85B and ESAT6, or fragments thereof, wherein the proteins, or fragments thereof, are joined in the order Ag85B-ESAT6 to form the dipeptide.

2. The recombinant RhCMV or HCMV vaccine vector of claim 1 , wherein expression of the Mtb antigen is driven by an antigen-coding sequence in operable association with a promoter selected from the group consisting of a constitutive CMV promoter, an immediate early CMV promoter, an early CMV promoter, and a late CMV promoter.

3. The recombinant RhCMV or HCMV vaccine vector of claim 2 , wherein the promoter is selected from the group consisting of EF1-alpha, UL82, MIE, pp65, and gH.

4. The recombinant RhCMV or HCMV vaccine vector of claim 1 , comprising a deletion or modification of US2, US3, US4, US5, US6, US11, or UL97, or a homolog thereof.

5. The recombinant RhCMV or HCMV vaccine vector of claim 1 , comprising a deletion of Rh158-166 or a homolog thereof.

6. The recombinant RhCMV or HCMV vaccine vector of claim 1 , wherein the vector lacks genes required for optimal growth in certain cell types or contains targets for tissue-specific micro-RNAs in genes essential for viral replication or wherein the vector has an epithelial, central nervous system (CNS), or macrophage deficient tropism, or a combination thereof.

7. The recombinant RhCMV or HCMV vaccine vector of claim 1 , wherein the RhCMV or HCMV vaccine vector has a deletion in a gene region non-essential for growth in vivo.

8. The recombinant RhCMV or HCMV vaccine vector of claim 7 , wherein the gene region is selected from the group consisting of the RL11 family, the pp65 family, the US12 family, and the US28 family.

9. The recombinant RhCMV vaccine vector of claim 8 , wherein the RhCMV gene region is selected from the group consisting of Rh13-Rh29, Rh111-Rh112, Rh191-Rh202, and Rh214-Rh220, or wherein the RhCMV gene region is selected from the group consisting of Rh13.1, Rh19, Rh20, Rh23, Rh24, Rh112, Rh190, Rh192, Rh196, Rh198, Rh199, Rh200, Rh201, Rh202, and Rh220.

10. The recombinant HCMV vaccine vector of claim 8 , wherein the HCMV gene region is selected from the group consisting of RL11, UL6, UL7, UL9, UL11, UL83 (pp65), US12, US13, US14, US17, US18, US19, US20, US21, and UL28.

11. The recombinant RhCMV or HCMV vaccine vector of claim 1 , wherein the vector comprises a deletion in a RhCMV or HCMV gene that is essential for replication within a host, dissemination within a host, or spreading from host to host.

12. The recombinant RhCMV or HCMV vaccine vector of claim 11 , wherein the essential gene is UL94, UL32, UL99, UL115, or UL44, or a homolog thereof.

13. The recombinant RhCMV or HCMV vaccine vector of claim 1 , wherein the vector comprises a deletion in gene UL82 (pp71) or a homolog thereof.

14. The recombinant RhCMV or HCMV vaccine vector of claim 1 , wherein the vector encodes US2 protein, US3 protein, or US6 protein, or a homolog thereof, and wherein the vector does not encode a functional US11 protein.

15. The recombinant RhCMV or HCMV vaccine vector of claim 14 , wherein the vector does not encode a functional US11 due to deletion of an open reading frame encoding the US11 protein.

16. The recombinant RhCMV or HCMV vaccine vector of claim 14 , wherein the vaccine vector comprises a nucleic acid sequence encoding US11 protein, and wherein the nucleic acid sequence encoding the US11 comprises a point mutation, a frameshift mutation, and/or a deletion of one or more nucleotides that renders the encoded US11 protein non-functional.

17. The recombinant RhCMV or HCMV vaccine vector of claim 16 , wherein the vector lacks the tegument protein pp65.

18. The recombinant RhCMV or HCMV vaccine vector of claim 1 , wherein the vector does not express an active UL130 protein.

19. The recombinant RhCMV or HCMV vaccine vector of claim 1 , wherein the RhCMV vaccine vector is Rh68-1 or Rh68-1.2.

20. The recombinant RhCMV or HCMV vaccine vector of claim 1 further comprising a microRNA recognition element (MRE) operably linked to a CMV gene that is essential or augmenting for CMV growth, and wherein the MRE silences expression in the presence of a microRNA that is expressed by a cell of myeloid lineage.

21. A pharmaceutical composition comprising the recombinant RhCMV or HCMV vaccine vector of claim 1 , and a pharmaceutically acceptable carrier.

22. A method for treatment of tuberculosis or eliciting an immune response to a Mtb antigen comprising administering to a subject in need thereof at least one recombinant RhCMV or HCMV vaccine vector of claim 1 .

23. The method of claim 22 , wherein the recombinant RhCMV or HCMV vaccine vector is administered to the subject intravenously, intramuscularly, intraperitoneally, intranasally, orally, or as an aerosol.

Assignees

• Int Aids Vaccine Initiative Inc
• Univ Oregon Health & Science

Inventors

• Evans Thomas G
• Anantha Ravi
• Bonavia Aurelio M
• Laddy Dominick J
• Picker Louis
• Hansen Scott
• Xu Guangwu

Classifications

• C12N15/86 Primary

  Viral vectors · CPC title

• A61K39/04 Primary

  Mycobacterium, e.g. Mycobacterium tuberculosis · CPC title

• C07K14/35

  from Mycobacteriaceae (F) · CPC title

• A61K2039/5256

  expressing foreign proteins · CPC title

• A61K2039/53

  DNA (RNA) vaccination · CPC title