Determining a bulk concentration of a target in a sample using a digital assay with compartments having nonuniform volumes

Patent metadata

Field	Value
Publication number	US-11577247-B2
Application number	US-202217689539-A
Country	US
Kind code	B2
Filing date	Mar 8, 2022
Priority date	Nov 26, 2018
Publication date	Feb 14, 2023
Grant date	Feb 14, 2023

Abstract

An embodiment of a system includes a compartment-generating device, a compartment detector, and electronic computing circuitry. The device is configured to generate compartments of a digital assay, at least one of the compartments having a respective volume that is different from a respective volume of each of at least another one of the compartments. The detector is configured to determine a number of the compartments each having a respective number of a target that is greater than a threshold number of the target. And the electronic circuitry is configured to determine a bulk concentration of the target in a source of the sample in response to the determined number of compartments. Because such a system can be configured to estimate a bulk concentration of a target in a source from a polydisperse digital assay, the system can be portable, and lower-cost and faster, than conventional systems.

First claim

The invention claimed is:

1. A method executed by a computing circuit, comprising:
generating compartments of a sample, at least one of the compartments having a respective volume that is different from a respective volume of each of at least another one of the compartments;
determining a characterized number of the compartments each having a respective number of a target that is greater than a threshold number of the target and a characterized volume for each of the compartments having the target greater than the threshold number; and
determining a bulk concentration of the target in a source of the sample by generating an estimate of the bulk concentration in response to the characterized number of the compartments having the target greater than the threshold number and the characterized volume for each of the compartments having the target greater than the threshold number, wherein the bulk concentration is determined by a digital-variable-volume-approximation (DVVA) algorithm.

2. The method of claim 1 wherein generating the compartments includes generating the compartments suspended in a barrier phase by shaking a container that includes the sample and the barrier phase.

3. The method of claim 1 wherein generating the compartments includes generating droplets suspended in a liquid by shaking a container that includes the sample and the liquid.

4. The method of claim 1 wherein determining the characterized number of compartments each having a respective number of the target that is greater than the threshold number of the target includes determining the characterized number of compartments in response to a wavelength of electromagnetic energy at which each of the number of the compartments luminesces.

5. The method of claim 1 wherein determining the characterized number of the compartments each having a respective number of the target that is greater than the threshold number of the target includes determining the characterized number of compartments in response to a wavelength of electromagnetic energy that each of the number of the compartments absorbs.

6. The method of claim 1 wherein determining the characterized number of the compartments each having a respective number of the target that is greater than the threshold number of the target includes determining the characterized number of compartments in response to a wavelength of electromagnetic energy that each of the number of the compartments passes.

7. The method of claim 1 wherein determining the characterized number of the compartments each having a respective number of the target that is greater than the threshold number of the target includes determining the characterized number of compartments in response to a wavelength of electromagnetic energy that each of the number of the compartments blocks.

8. The method of claim 1 wherein determining the bulk concentration of the target in the source of the sample includes determining the bulk concentration in response to a respective measured volume of each of the number of compartments.

9. The method of claim 1 wherein determining the bulk concentration of the target in the source of the sample includes determining the bulk concentration in response to a sum of a respective measured volume of each of the compartments.

10. The method of claim 1 wherein determining the bulk concentration of the target in the source of the sample includes determining the bulk concentration in response to a number of the compartments.

11. The method of claim 1 wherein determining the bulk concentration of the target in the source of the sample includes determining the bulk concentration in response to a number of other compartments.

12. The method of claim 1 wherein determining the bulk concentration of the target in the source of the sample includes determining the bulk concentration in response to a respective measured volume of each of other compartments.

13. The method of claim 1 wherein determining the bulk concentration of the target in the source of the sample includes determining the bulk concentration in response to a number of other compartments and a respective measured volume of each of the other compartments.

14. The method of claim 1 wherein determining the bulk concentration of the target in the source of the sample includes determining the bulk concentration in response to a probability density function of compartment volume.

15. The method of claim 1 wherein determining the bulk concentration of the target in the source of the sample includes determining a bulk concentration in response to a probability density function of compartment volume.

Assignees

• Tokitae Llc

Inventors

• Huynh Toan
• Weigl Bernhard Hans
• Byrnes Samantha A
• Nichols Kevin Paul Flood

Classifications

• B01L2300/0663

  Whole sensors · CPC title

• B01L2200/0673

  Handling of plugs of fluid surrounded by immiscible fluid · CPC title

• B01L3/5082 Primary

  Test tubes per se · CPC title

• B01L2200/18

  Transport of container or devices · CPC title

• C12Q1/6816

  characterised by the detection means (C12Q1/6804 takes precedence) · CPC title