Nepenthesin-1 derived resistance to fungal pathogens in major crop plants

Patent metadata

Field	Value
Publication number	US-11549124-B2
Application number	US-201816648122-A
Country	US
Kind code	B2
Filing date	Sep 20, 2018
Priority date	Sep 20, 2017
Publication date	Jan 10, 2023
Grant date	Jan 10, 2023

Abstract

The invention relates to a genetically modified cereal plant having a recombinant DNA construct comprising a gene encoding a polypeptide having aspartyl protease activity (EC 3.4.23.12) whose expression, particularly in grain, confers enhanced fungal disease resistance as compared to a parent cereal plant from which said genetically modified cereal plant was derived. The invention further relates to a method for producing a genetically modified cereal plant of the invention comprising transforming one or more cells of a parent cereal plant with the recombinant DNA construct; as well as a method for manufacturing the genetically modified grain for production of a crop of genetically modified cereal plants which exhibit increased resistance to a fungal disease due to expression of the recombinant DNA construct. Furthermore, use of grain produced by a genetically modified cereal plant of the invention includes the manufacture of a composition, comprising a milled grain composition, an animal fodder, or steam-pelleted animal fodder.

First claim

The invention claimed is:

1. A genetically modified crop plant having a recombinant DNA construct integrated into the genome of the crop plant; said construct comprising a polynucleotide operably linked to a heterologous promoter, wherein:
i. said heterologous promoter directs developing seed-specific or developing grain-specific expression of said operably linked polynucleotide, and
ii. said polynucleotide comprises a coding sequence encoding a signal peptide N-terminally fused to a polypeptide having aspartic endoprotease activity (EC 3.4.23.12), and wherein the amino acid sequence of said polypeptide has at least 88% sequence identity to a sequence selected from the group consisting of: SEQ ID No.: 4; amino acid residues 30-451 of SEQ ID No: 6; amino acid residues 30-451 of SEQ ID No: 8; amino acid residues 30-451 of SEQ ID No: 10; amino acid residues 28-446 of SEQ ID No: 12; amino acid residues 27-453 of SEQ ID No.: 45; amino acid residues 32-453 of SEQ ID No.: 47 and amino acid residues 29-460 of SEQ ID No.: 49,

wherein expression of said polynucleotide confers enhanced resistance to a fungal disease caused by a species of Fusarium and/or Aspergillus as compared to a parent plant lacking said construct from which said genetically modified crop plant was derived.

2. The genetically modified crop plant of claim 1 , wherein the plant is a cereal; and
wherein the nucleotide sequence of said heterologous promoter is selected from the group consisting of: SEQ ID No: 25; SEQ ID No: 26; SEQ ID No: 27; SEQ ID No: 28, SEQ ID No: 29, SEQ ID No: 50 and SEQ ID No: 51; and
wherein the amino acid sequence of said polypeptide having aspartic endoprotease activity (EC 3.4.23.12) has at least 88% sequence identity to a sequence selected from the group consisting of: SEQ ID No.: 4; amino acid residues 30-451 of SEQ ID No: 6;
amino acid residues 30-451 of SEQ ID No: 8; amino acid residues 30-451 of SEQ ID No: 10; amino acid residues 28-446 of SEQ ID No: 12; and amino acid residues 27-453 of SEQ ID No.: 45, and
wherein said promoter directs endosperm-specific expression of said polynucleotide.

3. The genetically modified crop plant of claim 1 , wherein the plant is a soybean plant; and
wherein the nucleotide sequence of said heterologous promoter is SEQ ID No: 52; and
wherein the amino acid sequence of said polypeptide having aspartic endoprotease activity (EC 3.4.23.12) has at least 88% sequence identity to SEQ ID No.: 4; or amino acid residues 32-453 of SEQ ID No.: 47.

4. The genetically modified crop plant of claim 1 , wherein the plant is a cotton plant, and
wherein the nucleotide sequence of said heterologous promoter is SEQ ID No: 54 or SEQ ID No: 55; and
wherein the amino acid sequence of said polypeptide having aspartic endoprotease activity (EC 3.4.23.12) has at least 88% sequence identity to SEQ ID No.: 4; or amino acid residues 29-460 of SEQ ID No.:49.

5. The genetically modified crop plant of claim 1 , where the amino acid sequence of said signal peptide is selected from the group consisting of: SEQ ID No: 14, 16, 18, 20, 22, 24 and amino acid residues 1-26 of SEQ ID No.: 45.

6. The genetically modified crop plant of claim 3 , wherein the amino acid sequence of said signal peptide is amino acid residues 1-31 of SEQ ID No.:47.

7. The genetically modified crop plant of claim 4 , wherein the amino acid sequence of said signal peptide is amino acid residues 1-28 of SEQ ID No.: 49.

8. The genetically modified crop plant of claim 1 , wherein said crop plant is a species of Triticum or Hordeum or Zea.

9. A genetically modified grain or seed produced by the genetically modified crop plant of claim 1 ; wherein the grain or the seed comprises the construct.

10. A method for producing the genetically modified crop plant of claim 1 ; the method comprising:
a. transforming one or more cells of a parent crop plant with the recombinant DNA construct, and
b. selecting transformed cells of said plant, wherein the genome of said cells comprises a copy of said recombinant DNA construct; and
c. regenerating a genetically modified crop plant from cells obtained in step (b);
whereby the genetically modified crop plant exhibits enchanted resistance to a fungal disease compared to a control plant lacking the construct.

11. A method for manufacturing the genetically modified grain or seed according to claim 9 for production of a crop of genetically modified crop plants which exhibit increased resistance to a fungal disease caused by a species of Fusarium and/or Aspergillus , said method comprising:
a. screening a population of plants for said recombinant DNA construct,
b. selecting plants identified in step (a) as comprising said recombinant DNA construct and
c. growing and collecting grain or seed from plants selected in step (b).

12. A method for producing a crop plant exhibiting increased resistance to a fungal disease caused by a species of Fusarium and/or Aspergillus , said method comprising:
a. obtaining a sample of genomic DNA from a crop plant according to claim 1 or a part thereof;
b. detecting in said sample the presence of said recombinant DNA construct;
c. breeding a crop plant comprising said recombinant DNA construct with a second cereal plant of the same genus to obtain grains or seeds; and
d. growing at least one crop plant from said grains or seeds,
wherein said crop plant grown from said grains or seeds comprises said recombinant DNA construct.

13. The method of claim 12 , where said recombinant DNA construct is detected by amplification of a region of the nucleic acid sequence of said construct, wherein said region has a 5′ end within the promoter and a 3′ end within the polynucleotide.

14. The method of claim 10 , wherein said crop plant is a species of Triticum or Hordeum or Zea.

15. A composition comprising the genetically modified grain or seed of claim 9 , wherein the composition is any one of:
a. a milled grain or seed composition,
b. animal fodder, and
c. steam-pelleted animal fodder.

Assignees

• Univ Aarhus

Inventors

• Bekalu Zelalem Eshetu
• Dionisio Giuseppe
• Madsen Claus Krogh
• Holme Inger Baeksted
• Etzerodt Thomas Povl
• Fomsgaard Inge
• Jørgensen Lise Nistrup
• Brinch-Pedersen Henrik

Classifications

• C12N15/8282 Primary

  for fungal resistance · CPC title

• A23K10/30

  from material of plant origin, e.g. roots, seeds or hay; from material of fungal origin, e.g. mushrooms (obtained by microbiological or biochemical processes, e.g. using yeasts or enzymes, A23K10/10) · CPC title

• C07K14/415

  from plants · CPC title

• C12N9/63

  derived from plants · CPC title

• C12Y304/23

  Aspartic endopeptidases (3.4.23) · CPC title