Microorganisms and methods for the biosynthesis of fumarate, malate, and acrylate

Patent metadata

Field	Value
Publication number	US-11525149-B2
Application number	US-201715600479-A
Country	US
Kind code	B2
Filing date	May 19, 2017
Priority date	Jun 17, 2008
Publication date	Dec 13, 2022
Grant date	Dec 13, 2022

Abstract

A non-naturally occurring eukaryotic or prokaryotic organism includes one or more gene disruptions occurring in genes encoding enzymes imparting increased fumarate, malate or acrylate production in the organism when the gene disruption reduces an activity of the enzyme. The one or more gene disruptions confers increased production of acrylate onto the organism. Organisms that produce acrylate have an acrylate pathway that at least one exogenous nucleic acid encoding an acrylate pathway enzyme expressed in a sufficient amount to produce acrylate, the acrylate pathway comprising a decarboxylase. Methods of producing fumarate, malate or acrylate include culturing these organisms.

First claim

What is claimed is:

1. A non-naturally occurring eukaryotic microbial organism, comprising one or more endogenous gene disruptions, said one or more gene disruptions occurring in genes encoding enzymes selected from the group consisting of
(a) a glycerol-3-phosphate dehydrogenase, a pyruvate decarboxylase, a soluble fumarate reductase, a mitochondrial fumarase, and a cytosolic fumarase; or
(b) a malic enzyme, a pyruvate kinase, a soluble fumarate reductase, a mitochondrial fumarase, and a cytosolic fumarase; and
wherein said one or more gene disruptions confers enhanced production of malate onto said non-naturally occurring eukaryotic microbial organism compared to a wild-type strain.

2. The non-naturally occurring eukaryotic microbial organism of claim 1 , wherein said organism is in culture medium comprising dissolved oxygen in an amount that is less than 10% of saturation, or wherein said microbial organism is in culture medium wherein the culture medium is in an atmosphere of less than 1% oxygen.

3. The non-naturally occurring eukaryotic microbial organism of claim 1 , wherein said one or more gene disruptions comprises a deletion of said one or more genes.

4. The non-naturally occurring eukaryotic microbial organism of claim 1 , further comprising an endogenous gene disruption of an encoded glucose-6-phosphate dehydrogenase.

5. The non-naturally occurring eukaryotic microbial organism of claim 4 , further comprising an endogenous gene disruption of an encoded cytosolic NADP-dependent isocitrate dehydrogenase.

6. A method for producing malic acid, comprising culturing the non-naturally occurring eukaryotic microbial organism according to claim 1 .

7. The method of claim 6 , wherein said culturing is conducted in a culture medium comprising dissolved oxygen in an amount that is less than 10% of saturation, or wherein said microbial organism is in culture medium wherein the culture medium is in an atmosphere of less than 1% oxygen.

8. The method of claim 6 , wherein said one or more gene disruptions comprises a deletion of said one or more genes.

9. The method of claim 6 , wherein said one or more gene disruptions encode enzymes selected from the group consisting of a glycerol-3-phosphate dehydrogenase, a pyruvate decarboxylase, a soluble fumarate reductase, a mitochondrial fumarase, and a cytosolic fumarase.

10. The method of claim 9 , wherein the non-naturally occurring eukaryotic microbial organism further comprises an endogenous gene disruption of an encoded glucose-6-phosphate dehydrogenase.

11. The method of claim 10 , wherein the non-naturally occurring eukaryotic microbial organism further comprises an endogenous gene disruption of an encoded cytosolic NADP-dependent isocitrate dehydrogenase.

12. The method of claim 6 , wherein said one or more gene disruptions encode enzymes selected from the group consisting of a malic enzyme, a pyruvate kinase, a soluble fumarate reductase, a mitochondrial fumarase, and a cytosolic fumarase.

Assignees

• Genomatica Inc

Inventors

• Burk Mark J
• Burgard Anthony P
• Pharkya Priti

Classifications

• C12N9/88

  Lyases (4.) · CPC title

• C12P7/46 Primary

  Dicarboxylic acids having four or less carbon atoms, e.g. fumaric acid, maleic acid · CPC title

• C12P7/40

  containing a carboxyl group {including Peroxycarboxylic acids} · CPC title