Scaffolded HIV-1 Env GP140 trimer immunogen

Patent metadata

Field	Value
Publication number	US-11452771-B2
Application number	US-202017021821-A
Country	US
Kind code	B2
Filing date	Sep 15, 2020
Priority date	Nov 1, 2017
Publication date	Sep 27, 2022
Grant date	Sep 27, 2022

Abstract

The present invention provides novel scaffolded HIV-1 vaccine immunogens. Some of the scaffolded immunogens contain a soluble gp140 trimer linked to the N-terminus of the nanoparticle subunit and a T-helper epitope that is fused via a short peptide spacer to the C-terminus of the nanoparticle subunit. Some other immunogens of the invention contain a soluble gp140 trimer protein that is linked to a stable nanoparticle via a short peptide spacer that is a T-helper epitope. Some of the scaffolded immunogens contain a gp140 trimer immunogen presented on a nanoparticle platform formed with I3-01 protein, E2p, or variants of protein 1VLW. Also provided in the invention are nucleic acids that encode the various vaccine immunogens described herein, and expression vectors and host cells harboring the nucleic acids. The invention further provides methods of using the scaffolded HIV-1 vaccine immunogens for preventing or treating HIV infections.

First claim

What is claimed is:

1. A polynucleotide sequence encoding a HIV-1 vaccine immunogen that comprises an HIV-1 Env-derived trimer protein presented on a self-assembling nanoparticle, wherein a linker sequence (a) is fused to the C-terminus of the nanoparticle subunit while the HIV-1 trimer protein subunit is fused to the N-terminus of the nanoparticle subunit or (b) links the HIV-1 trimer protein to the N-terminus of the nanoparticle subunit, wherein the self-assembling nanoparticle has a subunit sequence as shown in any one of SEQ ID NOs:6-17 or a conservatively modified variant thereof.

2. The polynucleotide sequence of claim 1 , wherein the HIV-1 Env-derived trimer protein is an uncleaved prefusion-optimized (UFO) gp140 trimer.

3. The polynucleotide sequence of claim 2 , wherein the UFO gp140 trimer is a chimeric trimer comprising a redesigned gp41 ECTO domain from HIV-1 strain BG505, wherein the redesigned gp41 ECTO domain contains (a) HR1 N-terminal bend replaced with a stabilizing loop sequence and (b) a cleavage-site linker.

4. The polynucleotide sequence of claim 1 , wherein the linker sequence comprises a T-helper epitope sequence or a glycine-serine linker or both.

5. The polynucleotide sequence of claim 1 , wherein the linker sequence comprises the sequence as shown in any one of SEQ ID NOs:1-3, or a conservatively modified variant thereof.

6. The polynucleotide sequence of claim 1 , wherein the linker sequence comprises 1 to 5 tandem repeats of GGGGS (SEQ ID NO:4) or GSGSG (SEQ ID NO:19).

7. The polynucleotide sequence of claim 1 , wherein the linker sequence is fused to the C-terminus of the nanoparticle subunit via a short peptide spacer, and a second peptide spacer links the HIV-1 trimer protein subunit to the N-terminus of the nanoparticle subunit.

8. The polynucleotide sequence of claim 1 , wherein the self-assembling nanoparticle comprises a trimeric sequence.

9. The polynucleotide sequence of claim 1 , wherein the HIV-1 Env-derived trimer protein is gp140.

10. The polynucleotide sequence of claim 1 , wherein the HIV-1 Env-derived trimer protein is an uncleaved prefusion-optimized (UFO) gp140 trimer.

11. The polynucleotide sequence of claim 10 , wherein the UFO gp140 trimer is a chimeric trimer comprising a redesigned gp41 ECTO domain from HIV-1 strain BG505, wherein the redesigned gp41 ECTO domain contains (a) HR1 N-terminal bend replaced with a stabilizing loop sequence and (b) a cleavage-site linker.

12. The polynucleotide sequence of claim 10 , wherein the HIV-1 Env-derived trimer is an UFO gp140 trimer, the self-assembling nanoparticle is generated with a subunit sequence as shown in any one of SEQ ID NOs:6-17, and the linker sequence comprises the sequence as shown in SEQ ID NO:1.

13. The polynucleotide sequence of claim 7 , wherein the linker sequence is encapsulated within the nanoparticle.

14. An expression vector that harbors the polynucleotide sequence of claim 1 .

15. An isolated host cell that harbors the polynucleotide sequence of claim 1 .

16. A pharmaceutical composition, comprising the polynucleotide sequence of claim 1 and a pharmaceutically acceptable carrier.

17. A method of inducing an HIV-1 neutralizing antibody in a subject, comprising administering to the subject a therapeutically effective amount of the pharmaceutical composition of claim 16 , thereby inducing a HIV-1 neutralizing antibody in the subject.

18. The method of claim 17 , wherein HIV-1 vaccine immunogen comprises an UFO gp140 trimer, a self-assembling nanoparticle generated with a subunit sequence as shown in any one of SEQ ID NOs:6-17, and a T-helper epitope sequence comprising the sequence as shown in SEQ ID NO:1, wherein the T-helper epitope sequence (a) is fused to the C-terminus of the nanoparticle subunit via a short peptide spacer while the UFO gp140 trimer subunit is fused to the N-terminus of the nanoparticle subunit or (b) covalently links the UFO gp140 trimer subunit at its C-terminus to the N-terminus of the nanoparticle subunit.

19. The method of claim 18 , wherein the T-helper epitope sequence fused to the C-terminus of the nanoparticle subunit is encapsulated within the nanoparticle upon self-assembly of the nanoparticle.

20. The method of claim 17 , wherein the HIV-1 Env-derived trimer protein is an uncleaved prefusion-optimized (UFO) gp140 trimer.

21. The method of claim 20 , wherein the UFO gp140 trimer is a chimeric trimer comprising a redesigned gp41 ECTO domain from HIV-1 strain BG505, wherein the redesigned gp41 ECTO domain contains (1) HR1 N-terminal bend replaced with a stabilizing loop sequence and (2) a cleavage-site linker.

Assignees

• Scripps Research Inst

Inventors

• Zhu Jiang
• He Linling

Classifications

• A61K2039/575

  humoral response · CPC title

• A61K2039/57

  characterised by the type of response, e.g. Th1, Th2 · CPC title

• C12N2740/16122

  New viral proteins or individual genes, new structural or functional aspects of known viral proteins or genes · CPC title

• C12N2740/16134

  Use of virus or viral component as vaccine, e.g. live-attenuated or inactivated virus, VLP, viral protein · CPC title

• A61P31/18 Primary

  for HIV · CPC title