Method for monitoring a reaction and to reaction system for implementing same

Patent metadata

Field	Value
Publication number	US-11220702-B2
Application number	US-201414504893-A
Country	US
Kind code	B2
Filing date	Oct 2, 2014
Priority date	Mar 4, 2011
Publication date	Jan 11, 2022
Grant date	Jan 11, 2022

Abstract

A method for monitoring a reaction and a reaction system are provided. The reaction system includes at least one vessel for the reaction medium, which is in fluid communication with an injection tube; at least one vessel for a carrier fluid that is immiscible with the reaction medium, which is in fluid communication with a reaction tube; the injection tube being mounted so as to lead into the reaction tube such that individual drops of the reaction medium can be injected into the reaction tube and into the immiscible carrier fluid, so as to form a train of reaction chambers; at least one detector for monitoring a reaction; a means for classifying the reaction chambers; and at least one means for recirculating reaction chambers in front of at least one detector for monitoring a reaction.

First claim

The invention claimed is:

1. A method of monitoring a reaction in a reaction mixture, during the culture of microorganisms in a culture medium, wherein in the method comprises the following steps:
a) filling a capillary reaction tube with a carrier fluid that is immiscible with the reaction mixture;
b) injecting, by means of a capillary injection tube, an individual drop of reaction mixture comprising microorganisms in the capillary reaction tube, into the immiscible carrier fluid;
c) circulating the carrier fluid so that the drop of reaction mixture is moved relative to the capillary injection tube;
e) repeating steps b) and c) to create an ordered succession of drops of reaction mixture in the carrier fluid to form a plurality of reactors, each reactor being an individual drop of reaction mixture comprising microorganisms in the carrier fluid;
f) measuring by a reaction monitoring detector at least one value of at least one parameter representative of a reaction in each individual drop of the succession of drops of reaction mixture in the carrier fluid and of the quantity of microorganism present in each individual drop;
g) introducing the succession of drops into a recirculator tube comprising a downstream portion positioned downstream of the reaction monitoring detector, and an upstream portion disposed upstream of the reaction monitoring detector, the drops flowing through the recirculator tube and being discharged from said upstream portion, thereby recirculating the succession of drops of reaction mixture in the carrier fluid by making each drop of reaction mixture in the carrier fluid pass repeatedly in the recirculation tube in a single direction in front of the reaction monitoring detector and measuring, by said reaction monitoring detector, for each individual drop of the succession of drops of reaction mixture in the carrier fluid, successive values of said at least one parameter representative of the reaction and the quantity of microorganism present in said individual drop, over time.

2. The method of monitoring a reaction in a reaction mixture as claimed in claim 1 , further comprising, after step c) and before step e), a step d) comprising injection, into the carrier fluid, of a drop of a separating fluid, immiscible with the carrier fluid and immiscible with the reaction mixture, so that at least one drop of separating fluid is interposed between two individual drops of reaction mixture in the carrier fluid and prevents their coalescence.

3. The method of monitoring a reaction in a reaction mixture as claimed in claim 1 , in which measurement is carried out by an optical method selected from the group consisting of measurements of absorbance, of diffusion, and of fluorescence, or by an electrical measurement comprising measuring impedance.

4. The method of monitoring a reaction in a reaction mixture as claimed in claim 1 , further comprising, after step e), a step f1) of recovery of at least one individual drop of reaction mixture in the carrier fluid of interest by aspiration of said individual drop of reaction mixture from the carrier fluid of interest into a sampling capillary tube mounted opening into the capillary reaction tube.

5. A method for monitoring reaction kinetics in a reaction mixture between at least one component of the reaction mixture and each of a plurality of different reagents, comprising:
generating an ordered stream of drops in a carrier fluid to form a plurality of reactors, said stream of drops comprising a series of elementary streams of drops, each elementary stream of drops being associated with at least one reagent of the plurality of reagents, whereby each drop of each elementary stream comprises said at least one reagent associated with the said elementary stream,
circulating the ordered stream of drops repeatedly in front of a reaction monitoring detector,
measuring, by said reaction monitoring detector, for each drop of the ordered stream of drops, successive values of at least one parameter representative of a reaction in said drop over time.

6. The method according to claim 5 , wherein each elementary stream of drops comprises at least one reagent not included in an adjacent elementary stream of drops.

7. The method according to claim 5 , wherein generating the ordered stream of drops comprises:
generating a plurality of consecutive elementary streams of drops, each of which is associated with at least one reagent of the plurality of reagents, between which intermediate streams of drops are arranged, and
suppressing with a valve the intermediate streams of drops.

8. The method according to claim 5 , wherein the concentration of at least one reagent varies within at least one elementary stream of drops according to a gradient.

9. The method according to claim 5 , wherein generating the ordered stream of drops includes the following steps:
(a′) generating a flow of reaction mixture,
(b′) filling a capillary reaction tube with a carrier fluid that is immiscible with the reaction mixture,
(c′) injecting an individual drop of reaction mixture in the capillary reaction tube by means of a capillary injection tube,
(d′) circulating the carrier fluid so that the drop of reaction mixture is displaced relative to the capillary injection tube,
(f′) the repetition of steps c′) and d′) to create an ordered stream of drops of reaction mixture in the carrier fluid.

10. The method according to claim 9 , wherein generating the flow of reaction mixture comprises:
forming a flow of reagents comprising a series of elementary reagent flows, each of which comprises at least one reagent of the plurality of reagents;
mixing the flow of reagents with a culture medium comprising the component to form the reaction medium flow.

11. The method according to claim 10 , wherein forming the flow of reagents comprises the following steps:
(α) generating a continuous flow of a solvent in a mixing channel;
(β) simultaneously with step α), injecting, by means of a capillary tube, a reagent chosen from the plurality of reagents, in the mixing channel to form an elementary reagent flow;
(γ) repeating step β) for each of the successive reagents of the plurality of reagents.

12. The method according to claim 11 , wherein forming the flow of reagents comprises, after the formation of each elementary reagent flow and before step γ), a step δ) of injecting a cleaning liquid into the mixing channel by means of a capillary tube.

13. The method according to claim 9 , wherein generating the ordered stream of drops further includes, after step d′) and before step f), a step e′) comprising injecting into the carrier fluid of a drop of a separating fluid immiscible with the carrier fluid or the reaction mixture, such that at least one drop of separating fluid is intercalated between two reactors and prevents them coalescing.

14. The method according to claim 1 , further comprising a step of referencing, using a referencing detector, each individual drop of reaction mixture in the carrier fluid and identifying each individual drop of reaction mixture in the carrier fluid uniquely in the succession of individual drops of reaction mixture in the carrier fluid, and a step of storing in a memory a position of each individual drop of reaction mixture in the carrier fluid relative to a reference reactor.

15. The method according to claim 14 , further comprising a step of associating each value of the representative parameter of the reaction in each individual drop, measured by said reaction monitoring detector, to the position of said individual drop relative to the reference reactor.

1

Assignees

• Centre Nat Rech Scient
• Univ Sorbonne

Inventors

• Bibette Jérôme
• Panizza Pascal
• Bremond Nicolas
• Bertholle Fabien
• Baudry Jean Marie
• Baraban Larysa
• Boitard Laurent

Classifications

• B01L2300/0838

  Capillaries · CPC title

• C12M25/01

  Drops · CPC title

• C12M23/16

  Microfluidic devices; Capillary tubes (integrated microfluidic structures B01L3/5027; microreactors B01J19/0093) · CPC title

• G01N35/08

  using a stream of discrete samples flowing along a tube system, e.g. flow injection analysis · CPC title

• C12Q1/02 Primary

  involving viable microorganisms · CPC title