KV1.3 binding immunoglobulins

Patent metadata

Field	Value
Publication number	US-11149086-B2
Application number	US-201515319737-A
Country	US
Kind code	B2
Filing date	Jun 18, 2015
Priority date	Jun 18, 2014
Publication date	Oct 19, 2021
Grant date	Oct 19, 2021

Abstract

The present invention relates to immunoglobulins that specifically bind Kv1.3 and more in particular to polypeptides, nucleic acids encoding such polypeptides; to methods for preparing such polypeptides; to compositions and in particular to pharmaceutical compositions that comprise such polypeptides, for prophylactic, therapeutic or diagnostic purposes. In particular, the immunoglobulins of the present invention inhibit the activity of Kv1.3.

First claim

The invention claimed is:

1. An immunoglobulin single variable domain that specifically binds to the EL1 extracellular loop of potassium channel 3 (Kv1.3) comprising amino acid residues 254-294 of SEQ ID NO: 474, wherein the immunoglobulin single variable domain modulates the activity of Kv1.3 by reducing or totally inhibiting the efflux of potassium ions from T-cells, as determined in Patch Clamp assay, wherein the immunoglobulin single variable domain has the structure FR1-CDR1-FR2-CDR2-FR3-CDR3-FR4, in which CDR1, CDR2 and CDR3 are complementarity determining regions, and FR1, FR2, FR3 and FR4 are framework regions, in which:
i) CDR1 consists of the amino acid sequence of any one of SEQ ID NOs: 181-210 or an amino acid sequence having 2 or 1 amino acid(s) substitution with the amino acid sequence of SEQ ID NO: 182; wherein
at position 3 the L has been changed into P;
at position 4 the F has been changed into L;
at position 5 the S has been changed into I or R;
at position 6 the R has been changed into P or V;
at position 7 the N has been changed into D;
at position 8 the S has been changed into R;
at position 9 the A has been changed into V or T; and/or
at position 10 the G has been changed into R; and

ii) CDR2 consists of the amino acid sequence of any one of SEQ ID NOs: 268-289 and SEQ ID NOs: 541-555 or an amino acid sequence having 2 or 1 amino acid(s) substitution with the amino acid sequence of SEQ ID NO: 269; wherein
at position 2 the I has been changed into V or L;
at position 4 the M has been changed into S, R, A, Q or T;
at position 5 the G has been changed into T;
at position 7 the S has been changed into D; and/or
at position 8 the I has been changed into T; and

iii) CDR3 consists of the amino acid sequence of any one of SEQ ID NOs: 393-415 or an amino acid sequence having 2 or 1 amino acid(s) substitution with the amino acid sequence of SEQ ID NO: 397; wherein
at position 3 the E has been changed into T or I;
at position 4 the G has been changed into E;
at position 5 the F has been changed into A, T or S; and/or
at position 7 the E has been changed into K.

2. The immunoglobulin single variable domain according to claim 1 , in which:
i) CDR1 consists of the amino acid sequence of any one of SEQ ID NOs: 181-210 or an amino acid sequence having 2 or 1 amino acid(s) substitution with the amino acid sequence of SEQ ID NO: 182, wherein
at position 5 the S has been changed into R;
at position 6 the R has been changed into V;
at position 8 the S has been changed into R;
at position 9 the A has been changed into V; and/or
at position 10 the G has been changed into R; and

ii) CDR2 consists of the amino acid sequence of any one of SEQ ID NOs: 268-289 and SEQ ID NOs: 541-555 or an amino acid sequence having 2 or 1 amino acid(s) substitution with the amino acid sequence of SEQ ID NO: 269, wherein
at position 2 the I has been changed into V or L;
at position 4 the M has been changed into S, R, A, or T;
at position 7 the S has been changed into D; and/or
at position 8 the I has been changed into T; and

iii) CDR3 consists of the amino acid sequence of any one of SEQ ID NOs: 393-415 or an amino acid sequence having 2 or 1 amino acid(s) substitution with the amino acid sequence of SEQ ID NO: 397, wherein
at position 3 the E has been changed into T or I;
at position 4 the G has been changed into E; and/or
at position 5 the F has been changed into A or S.

3. The immunoglobulin single variable domain according to claim 1 , wherein said immunoglobulin single variable domain is chosen from the group of polypeptides, wherein:
CDR1 is SEQ ID NO: 182, CDR2 is SEQ ID NO: 549, and CDR3 is SEQ ID NO: 397;
CDR1 is SEQ ID NO: 182, CDR2 is SEQ ID NO: 269, and CDR3 is SEQ ID NO: 397;
CDR1 is SEQ ID NO: 182, CDR2 is SEQ ID NO: 269, and CDR3 is SEQ ID NO: 394;
CDR1 is SEQ ID NO: 181, CDR2 is SEQ ID NO: 268, and CDR3 is SEQ ID NO: 393;
CDR1 is SEQ ID NO: 181, CDR2 is SEQ ID NO: 268, and CDR3 is SEQ ID NO: 395;
CDR1 is SEQ ID NO: 181, CDR2 is SEQ ID NO: 268, and CDR3 is SEQ ID NO: 396;
CDR1 is SEQ ID NO: 181, CDR2 is SEQ ID NO: 270, and CDR3 is SEQ ID NO: 393;
CDR1 is SEQ ID NO: 183, CDR2 is SEQ ID NO: 268, and CDR3 is SEQ ID NO: 393;
CDR1 is SEQ ID NO: 184, CDR2 is SEQ ID NO: 268, and CDR3 is SEQ ID NO: 393;
CDR1 is SEQ ID NO: 185, CDR2 is SEQ ID NO: 271, and CDR3 is SEQ ID NO: 398;
CDR1 is SEQ ID NO: 182, CDR2 is SEQ ID NO: 541, and CDR3 is SEQ ID NO: 394;
CDR1 is SEQ ID NO: 182, CDR2 is SEQ ID NO: 541, and CDR3 is SEQ ID NO: 397; and
CDR1 is SEQ ID NO: 182, CDR2 is SEQ ID NO: 549, and CDR3 is SEQ ID NO: 394.

4. The immunoglobulin single variable domain according to claim 1 , wherein said immunoglobulin single variable domain essentially consists of a domain antibody, an immunoglobulin that is suitable for use as a domain antibody, a single domain antibody, an immunoglobulin that is suitable for use as a single domain antibody, a dAb, an immunoglobulin that is suitable for use as a dAb, a Nanobody, a VHH sequence, a humanized VHH sequence, a camelized VH sequence, or a VHH sequence that has been obtained by affinity maturation; and wherein said immunoglobulin single variable domain is chosen from the group consisting of immunoglobulin single variable domains with SEQ ID NOs: 1-64, 495, 498-513 and 523-540 or immunoglobulin single variable domains that have a sequence identity of more than 85% with SEQ ID NOs: 1-64, 495, 498-513 and 523-540.

5. A polypeptide that comprises or essentially consists of one or more immunoglobulin single variable domains according to claim 1 .

6. The polypeptide according to claim 5 , wherein said polypeptide is chosen from the group of polypeptides with SEQ ID NOs: 451-473 or polypeptides that have a sequence identity of more than 85% with SEQ ID NOs: 451-473.

7. A compound or construct that comprises or essentially consists of an immunoglobulin single variable domain according to claim 1 , and which further comprises one or more other groups, residues, moieties or binding units, optionally linked via one or more peptidic linkers.

8. The compound or construct according to claim 7 , in which said one or more other groups, residues, moieties or binding units provide the polypeptide with increased half-life, compared to the corresponding immunoglobulin single variable domain without the one or more other groups, residues, moieties or binding units.

9. The compound or construct according to claim 8 , in which said one or more other groups, residues, moieties or binding units that provide the immunoglobulin single variable domain or polypeptide with increased half-life is chosen from the group consisting of a polyethylene glycol molecule, serum proteins or fragments thereof, binding units that can bind to serum proteins, an Fc portion, and small proteins or peptides that can bind to serum proteins.

10. The compound or construct according to claim 9 , wherein said compound or construct is chosen from the group consisting of compounds or constructs with SEQ ID NOs: 461-473 or compounds or constructs that have a sequence identity of more than 85% with SEQ ID NOs: 461-473.

11. The immunoglobulin single variable domain according to claim 1 , in which:
i) CDR1 consists of the amino acid sequence of any one of SEQ ID NOs: 181-210 or an amino acid sequence having 2 or 1 amino acid(s) substitution with the amino acid sequence of SEQ ID NO: 182; wherein
at position 6 the R has been changed into V; and/or
at position 9 the A has been changed into V; and

ii) CDR2 consists of the amino acid sequence of any one of SEQ ID NOs: 268-289 and SEQ ID NOs: 541-555 or an amino acid sequence having 2 or 1 amino acid(s) substitution wit

Assignees

• Ablynx Nv

Inventors

• Van Hoorick Diane
• Depla Erik
• Verdonck Frank Kamiel Delphina
• Delanote Veerle
• Janssen Daniel
• Descamps Francis
• Labadia Mark Edward
• Mikhail Ann
• Waterman Alisa K

Classifications

• C07K2317/31

  multispecific · CPC title

• A61P13/12

  of the kidneys · CPC title

• C07K2317/76

  Antagonist effect on antigen, e.g. neutralization or inhibition of binding · CPC title

• A61K2039/505

  comprising antibodies · CPC title

• A61P27/02

  Ophthalmic agents · CPC title