Temperature control for analysis of nucleic acids and other analytes

Patent metadata

Field	Value
Publication number	US-11041199-B2
Application number	US-201916721771-A
Country	US
Kind code	B2
Filing date	Dec 19, 2019
Priority date	Dec 20, 2018
Publication date	Jun 22, 2021
Grant date	Jun 22, 2021

Abstract

Provided herein and methods and apparatuses for sequencing nucleic acids. For example, provided is an analytical detection apparatus, including (a) a stage configured to support a flow cell; (b) a detector configured to observe a detection channel of the flow cell when the flow cell is supported by the stage; (c) a plurality of fluid delivery channels, wherein each of the fluid delivery channels fluidically connects a reservoir to the detection channel of the flow cell; and (d) a first heater configured to heat the plurality of fluid delivery channels.

First claim

What is claimed is:

1. A method for sequencing nucleic acids, comprising:
(a) providing a sequencing apparatus comprising a flow cell, a fluidic system, a delivery channel heater, a flow cell heater and a detection system,
wherein the flow cell comprises an array of nucleic acids in a detection channel,
wherein the fluidic system comprises a fluid delivery channel that fluidically connects a reservoir to the detection channel of the flow cell,
wherein the detection system observes signals from the array of nucleic acids;
(b) performing two or more sequencing cycles comprising the steps of:
(i) transferring a fluidic sequencing reagent from the reservoir to a heated region of the fluid delivery channel;
(ii) delivering heat from the delivery channel heater to the fluidic sequencing reagent while the fluidic sequencing reagent is at rest in the heated region, whereby the fluidic sequencing reagent is heated;
(iii) contacting the heated fluidic sequencing reagent with the array of nucleic acids by transferring the heated fluidic sequencing reagent from the heated region to the detection channel; and
(iv) delivering heat from the flow cell heater to the sequencing reagent in the detection channel, wherein the delivery channel heater has the same set point as the flow cell heater; and
(c) detecting signals from the array of nucleic acids via the detection system during the cycles;
thereby sequencing the nucleic acids.

2. The method of claim 1 , wherein the fluid delivery channel is at a higher temperature than the reservoir.

3. The method of claim 2 , wherein the flow cell is at a higher temperature than the reservoir.

4. The method of claim 1 , wherein the flow cell heater delivers heat to the flow cell by conduction.

5. The method of claim 1 , wherein the delivery channel heater delivers heat to the fluid delivery channel by conduction.

6. The method of claim 1 , wherein the sequencing apparatus further comprises a convection heater that transfers heat to the fluid delivery channel.

7. The method of claim 6 , wherein the convection heater is set to a temperature that is higher than the reservoir.

8. The method of claim 1 , wherein the volume of the detection channel is at most 10 ml.

9. The method of claim 1 , wherein the volume of the detection channel is at most 1 ml.

10. The method of claim 1 , wherein the sequencing apparatus further comprises a valve configured to control the flow of fluidic sequencing reagent through the fluid delivery channel.

11. The method of claim 10 , wherein the valve comprises a rotary valve.

12. The method of claim 11 , wherein the sequencing apparatus further comprises a heater configured to heat the valve.

13. The method of claim 1 , wherein the array comprises at least 1×10 3 different nucleic acids.

14. The method of claim 13 , wherein the nucleic acids are immobilized at sites in the array and wherein the sites each comprise an area of less than 25 square microns.

15. The method of claim 1 , wherein the array further comprises a plurality of ternary complexes, wherein each of the ternary complexes comprises a nucleic acid of the array, a polymerase and a next correct nucleotide for the nucleic acid.

16. The method of claim 1 , wherein the cross-sectional area of the detection channel is at most 100 mm 2 .

17. The method of claim 1 , wherein the sequencing apparatus further comprises a second reservoir.

18. The method of claim 17 , wherein the heated region of the fluid delivery channel fluidically connects the reservoir and the second reservoir to the detection channel of the flow cell.

19. The method of claim 17 , wherein a second fluid delivery channel fluidically connects the second reservoir to the detection channel of the flow cell.

20. The method of claim 19 , further comprising
(f) transferring a second fluidic sequencing reagent from the second reservoir to a heated region of the second fluid delivery channel;
(g) delivering heat from a second delivery channel heater to the second fluidic sequencing reagent while the second fluidic sequencing reagent is at rest in the heated region of the second fluid delivery channel, whereby the second fluidic sequencing reagent is heated;
(h) contacting the heated second fluidic sequencing reagent with the array of nucleic acids by transferring the heated second fluidic sequencing reagent to the detection channel; and
(i) delivering heat from the flow cell heater to the second sequencing reagent in the detection channel and detecting signals from the array of nucleic acids via the detection system.

21. The method of claim 1 , wherein the heated region of the fluidic delivery channel comprises at least 90% of the volume of the detection channel.

22. The method of claim 1 , wherein the set point of the flow cell heater is at most 80° C.

23. The method of claim 1 , wherein the set point of the delivery channel heater is at most 80° C.

Assignees

• Omniome Inc

Inventors

• Erickstad Michael John
• Villarreal Eric
• Balakrishnan Vyshnavi
• Aparicio Xenia
• Mcginley Rebecca
• Oliphant Arnold

Classifications

• B01L2300/18

  Means for temperature control · CPC title

• B01L2300/0819

  Microarrays; Biochips · CPC title

• B01L2300/0877

  Flow chambers · CPC title

• B01L2300/1827

  using resistive heater · CPC title

• C12Q1/6806

  Preparing nucleic acids for analysis, e.g. for polymerase chain reaction [PCR] assay (C12Q1/6804 takes precedence) · CPC title