Antigen-binding constructs targeting HER2

US11028182B2 · US · B2

Patent metadata
FieldValue
Publication numberUS-11028182-B2
Application numberUS-201615572364-A
CountryUS
Kind codeB2
Filing dateMay 13, 2016
Priority dateMay 13, 2015
Publication dateJun 8, 2021
Grant dateJun 8, 2021

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  5. First independent claim

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Abstract

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Described herein are high affinity antigen binding constructs, e.g., antibodies, directed to the ECD2 domain of HER2. The antigen-binding constructs comprise at least one antigen-binding polypeptide construct that binds to ECD2 of HER2 (HER2 ECD2) with increased affinity compared to a wild-type 2C4 antibody. Such antigen-binding polypeptide constructs comprise one or more amino acid modifications in the framework region and/or CDRs compared to the amino acid sequence of a wild-type 2C4 antibody that increase affinity of the antigen-binding polypeptide construct for ECD2 by 2-fold or greater. The antigen-binding constructs can inhibit the growth of HER2-expressing breast cancer cells and gastric cancer cells. Antigen-binding constructs in biparatopic format are internalized in HER2-expressing cells.

First claim

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The invention claimed is: 1. An antigen-binding construct comprising a variant first antigen-binding polypeptide construct which monovalently binds a first HER2 ECD2 (human epidermal growth factor receptor 2 extracellular domain 2) antigen, the variant first antigen-binding polypeptide construct comprising a heavy chain variable (VH) domain as set forth in SEQ ID NO:2 and a light chain variable (VL) domain as set forth in SEQ ID NO:11 and comprising an amino acid modification at position 75 in the VH domain (Kabat numbering) wherein the lysine at position 75 has been substituted with a tryptophan (H_K75W), glutamic acid (H_K75E), or tyrosine (H_K75Y), optionally wherein the variant first antigen-binding polypeptide construct comprises H_K75W and further comprises the following substitutions or set of substitutions, numbering according to Kabat numbering system: H_T30Q; or H_T30Y; or H_G56Y; or H_S99W; or L_Y49W; or L_Y96G; or H_S99W and L_Y49W; or L_Y49W and L_Y96G; or H_T30Q and L_Y49W; or H_T30Q and H_S99W; or H_T30Q and L_Y96G; or H_T30Y and L_Y49W; or H_S99W and L_Y49W and L_Y96G; or H_T3000 and H_S99W and L_Y96G or H_T3000 and H_S99W and L_Y49W; or H_T3000 and L_Y49W and L_Y96G; or H_T30Y and L_Y49W and L_Y96G, and optionally wherein the variant first antigen-binding polypeptide construct comprises H_K75E and further comprises the following substitutions or set of substitutions, numbering according to Kabat numbering system L_Y49W; or H_T30Q; or H_S74W; or H_S99W. 2. The antigen-binding construct of claim 1 , wherein the variant first antigen-binding polypeptide construct comprises H_K75W. 3. The antigen-binding construct of claim 1 , wherein the variant first antigen-binding polypeptide construct comprises H_K75W and further comprises the following substitutions or set of substitutions, numbering according to Kabat numbering system: H_T30Q; or H_T30Y; or H_G56Y; or H_S99W; or L_Y49W; or L_Y96G; or H_S99W and L_Y49W; or L_Y49W and L_Y96G; or H_T30Q and L_Y49W; or H_T30Q and H_S99W; or H_T30Q and L_Y96G; or H_T30Y and L_Y49W; or H_S99W and L_Y49W and L_Y96G; or H_T30Q and H_S99W and L_Y96G or H_T30Q and H_S99W and L_Y49W; or H_T30Q and L_Y49W and L_Y96G; or H_T30Y and L_Y49W and L_Y96G. 4. The antigen-binding construct of claim 1 , wherein the variant first antigen-binding polypeptide construct comprises H_K75E. 5. The antigen-binding construct of claim 1 , wherein the variant first antigen-binding polypeptide construct comprises H_K75E and further comprises the following substitutions or set of substitutions, numbering according to Kabat numbering system L_Y49W; or H_T30Q; or H_S74W; or H_S99W. 6. The antigen-binding construct of claim 1 , wherein the variant first antigen-binding polypeptide construct comprises H_K75Y. 7. The antigen-binding construct of claim 1 , wherein the variant first antigen-binding polypeptide construct is a Fab. 8. The antigen-binding construct of claim 1 , wherein the antigen-binding construct is one-armed. 9. The antigen binding construct of claim 7 , further comprising a first linker polypeptide operably linked to the variant first antigen-binding polypeptide construct. 10. The antigen-binding construct of claim 1 , wherein the antigen-binding construct comprises a second antigen-binding polypeptide construct that binds to a second antigen. 11. The antigen-binding construct of claim 10 , further comprising a first linker polypeptide operably linked to the variant first antigen-binding polypeptide construct, and a second linker polypeptide operably linked to the second antigen-binding polypeptide construct. 12. The antigen-binding construct of claim 11 , wherein the second antigen is a HER2 ECD2 antigen and the second antigen-binding polypeptide construct is identical to the variant first antigen-binding polypeptide construct. 13. The antigen-binding construct of claim 11 , wherein the second antigen is a HER2 ECD4 antigen and the second antigen-binding polypeptide construct is an scFv comprising the VH and VL domain of trastuzumab and a glycine-serine linker. 14. The antigen-binding construct according to claim 9 , wherein the first linker polypeptide is operably linked to a heterodimeric human IgG1 Fc comprising a first Fc polypeptide and a second Fc polypeptide each comprising a different CH3 sequence. 15. The antigen-binding construct according to claim 11 , wherein the first and second linker polypeptides are operably linked to a heterodimeric human IgG1 Fc comprising a first Fc polypeptide and a second Fc polypeptide each comprising a different CH3 sequence. 16. The antigen-binding construct of claim 14 , wherein the CH3 sequence of each Fc polypeptide comprises one or more modifications that promote the formation of a heterodimeric Fc with stability comparable to a wild-type homodimeric Fc, the heterodimeric IgG1 Fc having a) the modifications L351Y_F405A_Y407V in the first Fc polypeptide, and the modifications T366L_K392M_T394W in the second polypeptide; or b) the modifications L351Y_F405A_Y407V in the first Fc polypeptide, and the modifications T366L_K392L_T394W in the second Fc polypeptide; or c) the modifications T350V_L351Y_F405A_Y407V in the first Fc polypeptide, and the modifications T350V_T366L_K392L_T394W in the second Fc polypeptide; or d) the modifications T350V_L351Y_F405A_Y407V in the first Fc polypeptide, and the modifications T350V_T366L_K392M_T394W in the second Fc polypeptide; or e) the modifications T350V_L351Y_S400E_F405A_Y407V in the first Fc polypeptide, and the modifications T350V_T366L_N390R_K392M_T394W in the second Fc polypeptide; or f) the modifications T350V_L351Y_F405A_Y407V in the first Fc polypeptide, and the modifications T366I_N390R_K392M_T394W in the second Fc polypeptide; or g) the modifications L351Y_S400E_F405A_Y407V in the first Fc polypeptide, and the modifications T350V_T366L_K392L_T394W in the second Fc polypeptide, wherein the numbering of amino acid residues in the Fc is according to the EU numbering system. 17. The antigen-binding construct of claim 15 , wherein the CH3 sequence of each Fc polypeptide comprises one or more modifications that promote the formation of a heterodimeric Fc with stability comparable to a wild-type homodimeric Fc, the heterodimeric IgG1 Fc having a) the modifications L351Y_F405A_Y407V in the first Fc polypeptide, and the modifications T366L_K392M_T394W in the second polypeptide; or b) the modifications L351Y_F405A_Y407V in the first Fc polypeptide, and the modifications T366L_K392L_T394W in the second Fc polypeptide; or c) the modifications T350V_L351Y_F405A_Y407V in the first Fc polypeptide, and the modifications T350V_T366L_K392L_T394W in the second Fc polypeptide; or d) the modifications T350V_L351Y_F405A_Y407V in the first Fc polypeptide, and the modifications T350V_T366L_K392M_T394W in the second Fc polypeptide; or e) the modifications T350V_L351Y_S400E_F405A_Y407V in the first Fc polypeptide, and the modifications T350V_T366L_N390R_K392M_T394W in the second Fc polypeptide; or f) the modifications T350V_L351Y_F405A_Y407V in the first Fc polypeptide, and the modifications T366I_N390R_K392M_T394W in the second Fc polypeptide; or g) the modifications L351Y_S400E_F405A_Y407V in the first Fc polypeptide, and the modifications T350V_T366L_K392L_T394W in the second Fc polypeptide, wherein the numbering of amino acid residues in the Fc is according to the EU numbering system. 18. The antigen-binding construct of claim 1 , wherein the VH consists of

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What does patent US11028182B2 cover?
Described herein are high affinity antigen binding constructs, e.g., antibodies, directed to the ECD2 domain of HER2. The antigen-binding constructs comprise at least one antigen-binding polypeptide construct that binds to ECD2 of HER2 (HER2 ECD2) with increased affinity compared to a wild-type 2C4 antibody. Such antigen-binding polypeptide constructs comprise one or more amino acid modificatio…
Who is the assignee on this patent?
Zymeworks Inc
What technology area does this patent fall under?
Primary CPC classification C07K16/32. Mapped technology areas include Chemistry & Metallurgy.
When was this patent published?
Publication date Tue Jun 08 2021 00:00:00 GMT+0000 (Coordinated Universal Time) (B2). Legal status and post-grant events are not shown on this page.
What related patents are in patentsdb?
We list 4 related publications on this page (citations in our corpus or others sharing the same primary CPC).