Capping of unprotected amino groups during peptide synthesis

Patent metadata

Field	Value
Publication number	US-11028123-B2
Application number	US-201916380321-A
Country	US
Kind code	B2
Filing date	Apr 10, 2019
Priority date	Apr 10, 2018
Publication date	Jun 8, 2021
Grant date	Jun 8, 2021

Abstract

The present invention relates to a method for the synthesis of a polypeptide comprising a pre-determined amino acid sequence. The method according to the invention comprises coupling cycles of coupling an N-terminally protected amino acid building block C-terminally at an unprotected N-terminal amino group of an amino acid chain, wherein at least one coupling cycle comprises a coupling step (a), a capping step (b), and a de-protecting step (c).

First claim

The invention claimed is:

1. A method for the solid-phase synthesis of lixisenatide SEQ ID NO:1), the method comprising coupling cycles of amino acid building blocks of lixisenatide to an amino acid chain,
wherein said amino acid building blocks comprise an unprotected C-terminal carboxyl group and a protected N-terminal amino group comprising an Fmoc protecting group,
wherein said amino acid chain comprises an unprotected N-terminal amino group, and
wherein at least one coupling cycle comprises the steps:
(a) coupling the amino acid building block C-terminally at the unprotected N-terminal amino group of the amino acid chain, so that an amide bond is formed between the amino acid chain and the amino acid building block,
(b) contacting the product obtained in step (a) with a capping reagent comprising a capping compound, wherein the capping compound binds to an unprotected N-terminal amino group of the amino acid chain to which no building block has been coupled in step (a), and
(c) de-protecting the N-terminal amino group of the amino acid building block,
wherein the method comprises sufficient coupling cycles to produce lixisenatide (SEQ ID NO:1), and
wherein step (b) is performed after coupling of the amino acid building block at positions Arg(20), Glu(17), Gln(13, Leu(10) or Gly(4) of the lixisenatide sequence.

2. The method of claim 1 , wherein the capping compound is selected from the group consisting of acetic anhydride (CAS 108-24-7), homologues of acetic anhydride, benzoyl chloride (CAS 98-88-4), N-(benzyloxycarbonyloxy)succinimide (CAS 13139-17-8), benzyl chloroformate (CAS 501-53-1), esters of chloroformic acid, 1-acetylimidazole (CAS 2466-76-4), di-tert-butyl dicarbonate (CAS 24424-99-5) and N-(tert-butoxycarbonyloxy)succinimide (CAS 13139-12-3).

3. The method of claim 1 , wherein the capping reagent comprises 0.5-5% v/v of acetic anhydride.

4. The method of claim 1 , wherein the capping reagent comprises 0.2-2% v/v of diisopropylethylamine (DIPEA).

5. The method of claim 1 , wherein the capping reagent comprises a solvent that comprises N,N-dimethylformamide (DMF).

6. The method of claim 1 , wherein the step (b) is performed at a temperature of 15-25° C.

7. The method of claim 1 , wherein the step (b) is performed for 5 to 15 min.

8. The method of claim 1 , wherein the amino acid building block is a single amino acid selected from ARg, Glu, Gln, Leu, and Gly.

9. The method of claim 3 , where the capping reagent comprises 1-3% v/v of acetic anhydride.

10. The method of claim 3 , where the capping reagent comprises 2% v/v of acetic anhydride.

11. The method of claim 4 , where the capping reagent comprises 0.5-2% v/v of diisopropylethylamine (DIPEA).

12. The method of claim 4 , where the capping reagent comprises 1% v/v of diisopropylethylamine (DIPEA).

13. The method of claim 1 , further comprising the step of cleaving lixisenatide polypeptide linked to the solid phase after synthesis of the lixisenatide amino acid chain is completed.

14. A method for the solid-phase synthesis of lixisenatide, the method comprising coupling cycles of amino acid building blocks to an amino acid chain,
wherein said amino acid building blocks comprise an unprotected C-terminal carboxyl group and a protected N-terminal amino group comprising an Fmoc protecting group,
wherein said amino acid chain comprises an unprotected N-terminal amino group,
wherein at least one coupling cycle comprises the steps:
(a) coupling the amino acid building block C-terminally at the unprotected N-terminal amino group of the amino acid chain, so that an amide bond is formed between the amino acid chain and the amino acid building block,
(b) contacting the product obtained in step (a) with a capping reagent comprising a capping compound, wherein the capping compound binds to an unprotected N-terminal amino group of the amino acid chain to which no building block has been coupled in step (a), and
(c) de-protecting the N-terminal amino group of the amino acid building block, and
wherein the capping reagent comprises 0.5-5% v/v of acetic anhydride and 0.2-2% of diisopropylethylamine (DIPEA), and
wherein step (b) is performed after coupling of the amino acid building block at positions Arg(20), Glu(17), Gln(13, Leu(10) or Gly(4) of the lixisenatide sequence.

15. The method of claim 14 , wherein the capping reagent comprises 1-3% v/v of diisopropylethylamine (DIPEA) and 2% v/v of acetic anhydride.

16. The method of claim 14 , wherein the capping reagent comprises N,N-dimethylformamide (DMF).

17. The method of claim 14 , wherein the step (b) is performed at a temperature of 15-25° C.

18. The method of claim 14 , wherein the step (b) is performed for 5 to 15 min.

19. The method of claim 14 , where the capping reagent comprises 2% v/v of acetic anhydride and 1% v/v of diisopropylethylamine (DIPEA).

20. The method of claim 14 , further comprising the step of cleaving lixisenatide polypeptide linked to the solid phase after synthesis of the lixisenatide amino acid chain is completed.

21. The method of claim 14 , wherein the amino acid building block is a single amino acid selected from Arg, Glu, Gln, Leu and Gly.

Assignees

• Sanofi Aventis Deutschland

Inventors

• Henkel Bernd
• Metzenthin Tobias
• Gerken Manfred
• Fiedler Wolfgang

Classifications

• Y02P20/55

  Design of synthesis routes, e.g. reducing the use of auxiliary or protecting groups · CPC title

• C07K1/063 Primary

  for alpha-amino functions · CPC title

• C07K1/006 Primary

  of peptides containing derivatised side chain amino acids · CPC title

• C07K1/062

  for alpha- or omega-carboxy functions · CPC title

• C07K1/064

  for omega-amino or -guanidino functions · CPC title