Clonal haematopoiesis

Patent metadata

Field	Value
Publication number	US-10683552-B2
Application number	US-201515528807-A
Country	US
Kind code	B2
Filing date	Nov 23, 2015
Priority date	Nov 25, 2014
Publication date	Jun 16, 2020
Grant date	Jun 16, 2020

Abstract

The present invention relates to clonal expansion of somatic cells in subjects, and acquired selective advantage of cell clones during the lifetime of a subject. In particular, the invention relates to methods for predicting the development of cancer based on the observation of specific genetic mutations in somatic cell clones, as well as to methods for treating or preventing cancer in a subject, in which clonal expansion of cells comprising specific modifications is observed.

First claim

The invention claimed is:

1. A method of treating a hematological malignancy in a human subject comprising the steps of:
(a) sequencing DNMT3A nucleic acids from one or more cells in a blood sample of a human subject;
(b) detecting the presence of a mis-sense mutation in the sequenced DNMT3A nucleic acids, wherein the mis-sense mutation is G543C, F732C, Y735C, R749C, F751C, W753C, or L889C; and
(c) treating said human subject by reducing the incidence of haematopoietic clones comprising said mis-sense mutation in the human subject's blood.

2. The method according to claim 1 , wherein the incidence of haematopoietic clones comprising said mis-sense mutation in the subject's blood is reduced by transfusing the subject with blood in which said mutations are absent, or by administering a bone marrow transplant to the subject.

3. The method according to claim 1 , wherein the subject is at least 50 years of age.

4. The method according to claim 1 , wherein the subject is undergoing therapy for cancer that is not a haematological malignancy.

5. The method according to claim 4 , wherein the therapy is chemotherapy or radiotherapy.

6. The method according to claim 1 , wherein the subject is or has been exposed to a human carcinogen in sufficient amount and/or frequency for such carcinogen to be a potential cause of haematological malignancy.

7. The method of claim 6 , wherein the carcinogen is a tobacco product, an organic solvent, a virus, a compound found in grilled red meat, ionizing radiation, lead or a lead product.

8. The method of claim 7 , wherein the tobacco product is tobacco smoke or, the organic solvent is one used in a textile dye, a paint, or an ink.

9. The method according to claim 1 , wherein the haematological malignancy is a myeloproliferative neoplasm, a myelodysplastic syndrome, acute myeloid leukaemia or chronic lymphocytic leukaemia.

10. The method of claim 1 , further comprising the step of obtaining the blood sample from the subject prior to step (a).

11. A method of treating a hematological malignancy in a human subject who has been identified as comprising a mis-sense mutation selected from G543C, F732C, Y735C, R749C, F751C, W753C, and L889C in a DNMT3A nucleic acid in one or more of their blood cells, the method comprising reducing the incidence of haematopoietic clones comprising said mis-sense mutation in the human subject's blood.

12. The method according to claim 11 , wherein the incidence of haematopoietic clones comprising said mis-sense mutation in the subject's blood is reduced by transfusing the subject with blood in which said mutations are absent, or by administering a bone marrow transplant to the subject.

13. The method according to claim 11 , wherein the subject is at least 50 years of age.

14. The method according to claim 11 , wherein the subject is undergoing therapy for cancer that is not a haematological malignancy.

15. The method according to claim 14 , wherein the therapy is chemotherapy or radiotherapy.

16. The method according to claim 11 , wherein the subject is or has been exposed to a human carcinogen in sufficient amount and/or frequency for such carcinogen to be a potential cause of haematological malignancy.

17. The method of claim 16 , wherein the carcinogen is a tobacco product, an organic solvent, a virus, a compound found in grilled red meat, ionizing radiation, lead or a lead product.

18. The method of claim 17 , wherein the tobacco product is tobacco smoke or, the organic solvent is one used in a textile dye, a paint, or an ink.

19. The method according to claim 11 , wherein the haematological malignancy is a myeloproliferative neoplasm, a myelodysplastic syndrome, acute myeloid leukaemia or chronic lymphocytic leukaemia.

Assignees

• Broad Inst Inc
• Harvard College
• Presidents And Fellows Of Harvard College

Inventors

• Mccarroll Steven Andrew
• Genovese Giulio

Classifications

• C12Q1/6883

  for diseases caused by alterations of genetic material · CPC title

• C12Q2600/118

  Prognosis of disease development · CPC title

• G01N2333/91017

  with definite EC number (2.1.1.-) · CPC title

• C12Q1/6886 Primary

  for cancer (immunoassay for cancer G01N33/575) · CPC title

• C12Q2600/156

  Polymorphic or mutational markers · CPC title