T cell-antigen coupler with various construct optimizations

Patent metadata

Field	Value
Publication number	US-10640562-B2
Application number	US-201916442274-A
Country	US
Kind code	B2
Filing date	Jun 14, 2019
Priority date	Jul 17, 2018
Publication date	May 5, 2020
Grant date	May 5, 2020

Abstract

A trifunctional molecule is provided, comprising (i) a target-specific ligand, (ii) a ligand that binds a protein associated with a TCR complex, and (iii) a T cell receptor signaling domain polypeptide. Variants of the molecule are provided, including variants that exhibit optimized surface expression, transduction efficiency, and effector functionality. Variations include, for example, different ligands that bind CD3 epsilon (e.g., OKT3, L2K, F6A, UCHT1 and humanized UCHT1), different signaling domains, and different linkers between domains.

First claim

What is claimed is:

1. A nucleic acid sequence encoding a CD19 Trifunctional T cell-antigen coupler (CD19-TAC) comprising:
(a) a first polynucleotide encoding a ligand that selectively binds a CD 19 antigen;
(b) a second polynucleotide encoding a humanized variant of a UCHT1 (huUCHT1) that binds a CD3 protein associated with a TCR complex on a T cell expressing said CD-19-TAC, wherein the huUCHT1 comprises an amino acid sequence having at least 80% sequence identity with SEQ ID NO: 46 and having an Y to T substitution at position 177 of SEQ ID NO:46 (Y177T); and
(c) a third polynucleotide encoding a T cell anchoring co-receptor domain polypeptide comprising a CD4 cytosolic domain and a CD4 transmembrane domain;
wherein the ligand encoded by (a), the huUCHT1 encoded by (b), and the polypeptide encoded by (c) are fused directly to each other, or joined by at least one linker.

2. The nucleic acid sequence of claim 1 , wherein the nucleic acid sequence does not encode a co-stimulatory domain, an activation domain, or both a co-stimulatory domain and an activation domain.

3. The nucleic acid sequence of claim 1 , wherein the ligand that selectively binds the CD19 antigen is a single chain variable fragment (scFv).

4. The nucleic acid sequence of claim 1 , wherein the ligand that selectively binds the CD19 antigen comprises an amino acid sequence having at least 80% sequence identity with SEQ ID NO: 36.

5. The nucleic acid sequence of claim 1 , wherein the ligand that selectively binds the CD19 antigen comprises an amino acid sequence of SEQ ID NO: 36.

6. The nucleic acid sequence of claim 1 , wherein the huUCHT1 comprising the Y177T mutation as defined in SEQ ID NO:46 is a single chain antibody.

7. The nucleic acid sequence of claim 1 , wherein the huUCHT1 comprising the Y177T mutation comprises an amino acid sequence of SEQ ID NO: 46.

8. The nucleic acid sequence of claim 1 , wherein the third polynucleotide encodes a polypeptide comprising an amino acid sequence having at least 80% sequence identity with SEQ ID NO: 18.

9. The nucleic acid sequence of claim 1 , wherein the third polynucleotide encodes a polypeptide comprising an amino acid sequence of SEQ ID NO: 18.

10. The nucleic acid sequence of claim 1 , wherein the at least one linker is a G4S flexible linker, a large protein domain, a long helix structure, or a short helix structure.

11. The nucleic acid sequence of claim 1 , wherein the at least one linker comprises an amino acid sequence having at least 80% sequence identity with SEQ ID NO: 12, SEQ ID NO: 32, SEQ ID NO: 30, or SEQ ID NO: 28.

12. The nucleic acid sequence of claim 1 , wherein the at least one linker comprises an amino acid sequence of SEQ ID NO: 12, SEQ ID NO: 32, SEQ ID NO: 30, or SEQ ID NO: 28.

13. The nucleic acid sequence of claim 1 , wherein the CD19-TAC comprises a nucleic acid sequence having at least 80% sequence identity with SEQ ID NO: 63.

14. The nucleic acid sequence of claim 1 , wherein the CD19-TAC comprises an amino acid sequence having at least 80% sequence identity with SEQ ID NO: 64.

15. The nucleic acid sequence of claim 1 , wherein the CD19-TAC comprises a sequence of SEQ ID NO: 63 or SEQ ID NO: 64.

16. A vector construct comprising:
(a) a nucleic acid sequence of claim 1 ; and
(b) a promoter functional in a mammalian cell.

17. A composition comprising the vector of claim 16 , and an excipient.

18. A polypeptide encoded by the nucleic acid sequence of claim 1 .

Assignees

• Univ Mcmaster

Inventors

• Bramson Jonathan Lorne
• Helsen Christopher W
• Hammill Joanne Alicia
• Mwawasi Kenneth Anthony

Classifications

• C07K16/2809 Primary

  against the T-cell receptor (TcR)-CD3 complex · CPC title

• C07K2317/622

  Single chain antibody (scFv) · CPC title

• C07K16/32

  against translation products of oncogenes · CPC title

• C07K2317/522

  CH1 domain · CPC title

• C07K14/70514

  CD4 · CPC title